ENCODExplorer (version 1.4.3)

export_ENCODEdb_accession: Extract accession numbers from all the datasets of RSQLite databse in a data.frame

Description

Extract accession numbers from all the datasets of RSQLite databse in a data.frame

Usage

export_ENCODEdb_accession(df = NULL, database_filename)

Arguments

df

list of two data.frame containing ENCODE experiment and dataset metadata. Default

database_filename

The name of the file to save the database into.

Value

a data.frame composed of 3 fields : accession, files (list of files accessions) and dataset_type.

Examples

    database_filename <- system.file("extdata/ENCODEdb.sqlite",
                                                                       package = "ENCODEdb")
    ## Not run: 
#         export_ENCODEdb_accession(database_filename = database_filename)
#     ## End(Not run)