ENCODExplorer (version 1.4.3)

prepare_ENCODEdb: Create the RSQLite databse for the tables in ENCODE

Description

Create the RSQLite databse for the tables in ENCODE

Usage

prepare_ENCODEdb(database_filename = "inst/extdata/ENCODEdb.sqlite", types = get_encode_types(), overwrite = FALSE)

Arguments

database_filename

The name of the file to save the database into.

types

The names of the tables to extract from ENCODE rest api.

overwrite

Should tables already present in database be overwrited Default: FALSE.

Value

is a list with selected tables from ENCODE that were used to create the RSQLite database.

Examples

prepare_ENCODEdb(database_filename = "platform.sql", types = "platform")
file.remove("platform.sql")
    ## Not run: 
#         prepare_ENCODEdb("ENCODEdb.sqlite")
#     ## End(Not run)