ENVISIONQuery (version 1.20.0)

getInputTypes: Get the list of available input types for a given tool.

Description

Get the list of available input types for a given tool.

Usage

getInputTypes(tool, inputType="menu")

Arguments

tool

The tool handler

inputType

Either 'menu' or a valid input type. Default is 'menu'.

Value

valid input type, the inputType value returned, otherwise returns NULL.

Details

The input types could be subdivided into the following three groups: 1. The list of IDs (types 'Uniprot ID', 'Affymetrix ID', 'Enquant ID' and 'Protein ID'). 2. The character string representing the enfinXML document ('Enfin XML') and 3. The name of the file containing the enfinXML document. The types belonging to the groups 2 and 3 can be used to construct a pipeline of queries, where the output of the given query can be used as an input for the next one

Examples

service<-getService("Reactome");
tool<-getTool(service,"FindPathAdv");
getInputTypes(tool);