EWCE (version 1.0.2)

read_celltype_data: Read single cell transcriptome data

Description

read_celltype_data loads single cell transcriptome data and determines for each gene, the proportion of expression found in each celltype

Usage

read_celltype_data(path)

Arguments

path

Path to the file containing the single cell transcriptome data

Value

A list containing three data frames:

• all_scts: stores the average value for each subcell type found across cells
• cell_dists: proportion of expression for each gene in each cell type
• subcell_dists: proportion of expression for each gene in each subcell type

Examples

celltype_data = read_celltype_data("expression_mRNA_17-Aug-2014.txt")