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EbayesThresh (version 1.4-12)

Empirical Bayes Thresholding and Related Methods

Description

Empirical Bayes thresholding using the methods developed by I. M. Johnstone and B. W. Silverman. The basic problem is to estimate a mean vector given a vector of observations of the mean vector plus white noise, taking advantage of possible sparsity in the mean vector. Within a Bayesian formulation, the elements of the mean vector are modelled as having, independently, a distribution that is a mixture of an atom of probability at zero and a suitable heavy-tailed distribution. The mixing parameter can be estimated by a marginal maximum likelihood approach. This leads to an adaptive thresholding approach on the original data. Extensions of the basic method, in particular to wavelet thresholding, are also implemented within the package.

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install.packages('EbayesThresh')

Monthly Downloads

78,843

Version

1.4-12

License

GPL (>= 2)

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Maintainer

Peter Carbonetto

Last Published

August 8th, 2017

Functions in EbayesThresh (1.4-12)

tfromx

Find thresholds from data
threshld

Threshold data with hard or soft thresholding
postmed

Posterior median estimator
tfromw

Find threshold from mixing weight
isotone

Weighted least squares monotone regression
postmean

Posterior mean estimator
ebayesthresh

Empirical Bayes thresholding on a sequence
ebayesthresh.wavelet

Empirical Bayes thresholding on the levels of a wavelet transform.
beta.cauchy

Function beta for the quasi-Cauchy prior
beta.laplace

Function beta for the Laplace prior
vecbinsolv

Solve systems of nonlinear equations based on a monotonic function
wandafromx

Find weight and scale factor from data if Laplace prior is used.
wfromt

Mixing weight from posterior median threshold
wfromx

Find Empirical Bayes weight from data
wmonfromx

Find monotone Empirical Bayes weights from data.
zetafromx

Estimation of a parameter in the prior weight sequence in the EbayesThresh paradigm.