example_sp_invertebase

This is a data dump downloaded from invertEbase, as the R package link with InverEbase is currently archive and not maintained, we are providing an example file.

datasets

Provides step-by-step automation for integrating biodiversity data from multiple online aggregators, merging and cleaning datasets while addressing challenges such as taxonomic inconsistencies, georeferencing issues, and spatial or environmental outliers. Includes functions to extract environmental data and to define the biogeographic ranges in which species are most likely to occur. For methodological details see the associated publication.<doi: 10.1002/ecog.08203>.

Priyanka Soni

EcoCleanR

Enhancing Data Quality of Biogeographic Ranges with Application
for Marine Invertebrates

Austin Hendy

David Bottjer

Vijay Barve

example_sp_invertebase function

A data frame with 710 rows and 20 variables:<dl>
<dt>source</dt>
<dd>invertEbase</dd><dt>catalogNumber</dt>
<dd>CatalogNumber</dd><dt>basisOfRecord</dt>
<dd>type of observations</dd><dt>occurrenceStatus</dt>
<dd>presence or absent</dd><dt>institutionCode</dt>
<dd>Institution code</dd><dt>verbatimEventDate</dt>
<dd>when was this occurrence created</dd><dt>scientificName</dt>
<dd>species name</dd><dt>individualCount</dt>
<dd>abundance</dd><dt>organismQuantity</dt>
<dd>abundance</dd><dt>abundance</dt>
<dd>abundance</dd><dt>decimalLatitude</dt>
<dd>Latitude in decimal degrees</dd><dt>decimalLongitude</dt>
<dd>Longitude in decimal degrees</dd><dt>coordinateUncertaintyInMeters</dt>
<dd>uncertainty of coordiantes</dd><dt>locality</dt>
<dd>location information</dd><dt>verbatimLocality</dt>
<dd>verbatim location information</dd>
<dt>municipality</dt>
<dd>municipality</dd><dt>country</dt>
<dd>country</dd><dt>stateProvince</dt>
<dd>State or Provinces</dd><dt>county</dt>
<dd>county</dd><dt>countryCode</dt>
<dd>country code</dd>
</dl>

Format

dataset6: Documentation of data file - example_sp_invertebase.rda — example_sp_invertebase

A data frame with 710 rows and 20 variables:<dl>
<dt>source</dt>
<dd>invertEbase</dd>

<dt>catalogNumber</dt>
<dd>CatalogNumber</dd>

<dt>basisOfRecord</dt>
<dd>type of observations</dd>

<dt>occurrenceStatus</dt>
<dd>presence or absent</dd>

<dt>institutionCode</dt>
<dd>Institution code</dd>

<dt>verbatimEventDate</dt>
<dd>when was this occurrence created</dd>

<dt>scientificName</dt>
<dd>species name</dd>

<dt>individualCount</dt>
<dd>abundance</dd>

<dt>organismQuantity</dt>
<dd>abundance</dd>

<dt>abundance</dt>
<dd>abundance</dd>

<dt>decimalLatitude</dt>
<dd>Latitude in decimal degrees</dd>

<dt>decimalLongitude</dt>
<dd>Longitude in decimal degrees</dd>

<dt>coordinateUncertaintyInMeters</dt>
<dd>uncertainty of coordiantes</dd>

<dt>locality</dt>
<dd>location information</dd>

<dt>verbatimLocality</dt>
<dd>verbatim location information</dd>


<dt>municipality</dt>
<dd>municipality</dd>

<dt>country</dt>
<dd>country</dd>

<dt>stateProvince</dt>
<dd>State or Provinces</dd>

<dt>county</dt>
<dd>county</dd>

<dt>countryCode</dt>
<dd>country code</dd>


</dl>

example_sp_invertebase: dataset6: Documentation of data file - example_sp_invertebase.rda

Description

Usage

Arguments

Format