The name of the S slot column with the groups
for the hierfstat data frame.
to_numeric
Recode the genetic data into numeric format? If TRUE,
the functions performs the correction via eco.format.
Additional formatting parameters can be passed to this function.
nout
Number of digits in the output when to_numeric = TRUE.
recode
Recode mode when to_numeric = TRUE: "all" for recoding
the data considering all the individuals values at once (e.g., protein data),
"column" for recoding the values by column (e.g., microsatellite data), "paired"
for passing the values of allelic states and corresponding replacement values, using
the replace_in and replace_out arguments (e.g. replace_in = c("A", "T", "C", "G"),
replace_out = c(1,2,3,4)).
replace_in
vector with states of the data matrix to be replaced, when recode = "paired".
This argument must be used in conjunction with the argument "replace_out".
replace_out
vector with states of the data matrix used for replacement, when recode = "paired".
This argument must be used in conjunction with the argument "replace_in".
...
Additional parameters passed to eco.format when to_numeric = TRUE
# NOT RUN {# }# NOT RUN {data(eco.test)
hiereco <- ecogen2hierfstat(eco, "pop", to_numeric = TRUE)
require("hierfstat")
basic.stats(hiereco)
# }# NOT RUN {# }