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R package: Ecume

This package implemements (or re-implements in R) a variety of statistical tools used to do non-parametric two-sample (or k-sample) distribution comparisons in the univariate or multivariate case.

If you want to suggest a new test or a variant, open an issue.

Installation

To install the current version of Ecume, run.

if(!requireNamespace("BiocManager", quietly = TRUE)) {
 install.packages("BiocManager") 
}
BiocManager::install("Ecume")

To install the development version in R, run

if(!requireNamespace("devtools", quietly = TRUE)) {
 install.packages("devtools") 
}
devtools::install_github("HectoRDB/Ecume")

Usage

The Ecume package has been developed as part of the condiments paper but it was spawned as a separate package since it use can be broader than scRNA-Seq data analysis. The online vignette is a good place to get started.

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Version

Install

install.packages('Ecume')

Monthly Downloads

561

Version

0.9.1

License

MIT + file LICENSE

Maintainer

Hector Roux de Bezieux

Last Published

March 15th, 2021

Functions in Ecume (0.9.1)

%>%

Pipe operator
ks_test

Weighted KS Test
wasserstein_permut

Permutation test based on Wasserstein distance
stouffer_zscore

Stouffer
mmd_test

Perform the Maximum Mean Discrepancy unbiased bootstrap test
classifier_test

Classifier k-sample test