ExpressionPalette

Marker expression palette generator based off ColorBrewer's RdYlBu,
only better for plotting of half-transparent cells

Provides a smooth mapping of multidimensional points into
low-dimensional space defined by a self-organizing map. Designed to work
with 'FlowSOM' and flow-cytometry use-cases. See Kratochvil et al. (2019)
<doi:10.12688/f1000research.21642.1>.

Mirek Kratochvil

EmbedSOM

Fast Embedding Guided by Self-Organizing Map

Sofie Van Gassen

Britt Callebaut

Yvan Saeys

Ron Wehrens

ExpressionPalette function

<dl><dt>n</dt>
<dd>How many colors to generate</dd>
<dt>alpha</dt>
<dd>Opacity of the colors</dd></dl>

Arguments

Marker expression palette generator based off ColorBrewer's RdYlBu,
only better for plotting of half-transparent cells — ExpressionPalette

<dl>

<dt>n</dt>
<dd>How many colors to generate</dd>


<dt>alpha</dt>
<dd>Opacity of the colors</dd>

</dl>

ExpressionPalette: Marker expression palette generator based off ColorBrewer's RdYlBu, only better for plotting of half-transparent cells

Description

Usage

Arguments

Examples