tSNECoords

Add tSNE-based coordinates to a map

Provides a smooth mapping of multidimensional points into
low-dimensional space defined by a self-organizing map. Designed to work
with 'FlowSOM' and flow-cytometry use-cases. See Kratochvil et al. (2019)
<doi:10.12688/f1000research.21642.1>.

Mirek Kratochvil

EmbedSOM

Fast Embedding Guided by Self-Organizing Map

Sofie Van Gassen

Britt Callebaut

Yvan Saeys

Ron Wehrens

tSNECoords function

<dl><dt>dim</dt>
<dd>Dimension of the result (passed to <code>tSNEFn</code> as <code>dims</code>)</dd>
<dt>tSNEFn</dt>
<dd>tSNE function to run (default Rtsne::Rtsne)</dd>
<dt>...</dt>
<dd>passed to <code>tSNEFn</code></dd></dl>

Arguments

Add tSNE-based coordinates to a map — tSNECoords

<dl>

<dt>dim</dt>
<dd>Dimension of the result (passed to <code>tSNEFn</code> as <code>dims</code>)</dd>


<dt>tSNEFn</dt>
<dd>tSNE function to run (default Rtsne::Rtsne)</dd>


<dt>...</dt>
<dd>passed to <code>tSNEFn</code></dd>

</dl>

tSNECoords: Add tSNE-based coordinates to a map

Description

Usage

Value

Arguments