Epidemiological rates for diabetes in Denmark 1996--2015
Epi: Functions for manipulation and statistical analysis of epidemiological data
Births in Denmark by year and month of birth and sex
Conversion to diabetes
The Aalen-Johansen estimator of state probabilities from a
multistate Lexis object.
The Danish National Diabetes Register.
Fits a regression model to interval censored data.
Fit Lee-Carter-type models for rates to arbitrarily shaped observations
of rates in a Lexis diagram.
Clinical status,
relapse, metastasis and death in 2982 women with breast cancer.
Create a Lexis object of follow-up
Natural splines - (cubic splines linear beyond outermost knots) with
convenient specification of knots and possibility of centering,
detrending and clamping.
Set up an array of NAs, solely from the list of dimnames
Create risk time ("Person-Years") in Lexis triangles from population count data.
Mortality in Denmark 1974 ff.
Population size in Denmark
Compute dates/ages for life lines in a Lexis diagram
Draw life lines in a Lexis diagram.
Function to compute and draw ROC-curves.
Plot a Lexis diagram
Convert a Lexis obejct to a data set suitable for input to the
msm:msm function.
Reorder and combine levels of a factor
Produce an empty frame for display of parameter-estimates from
Age-Period-Cohort-models.
A case-control study of endometrial cancer
Fit Age-Period-Cohort models and Lee-Carter models with effects
modeled by natural splines.
A wrapper for termplot that optionally (but by default)
exponentiates terms, and plot them on a common log-scale. Also scales
x-axes to the same physical scale.
Population risk time in Denmark
Salmonella Typhimurium outbreak 1996 in Denmark.
Add covariates (typically clinical measurements) taken at known times
to a Lexis object.
Expand a Lexis object with information of drug exposure based on
purchase dates and -amounts
Fit an Age-Period-Cohort model to tabular data.
Bereavement in an elderly cohort
Births in a London Hospital
Create a bootstrap sample of persons (as identified by lex.id) from a Lexis object
Compute cumulative sum of estimates.
Compute linear functions of parameters with standard errors and
confidence limits, optionally transforming to a different scale.
Generate a nested case-control study
Draw boxes and arrows for illustration of multistate models.
Bladder cancer mortality in Italian males
Compute cumulative risks and expected sojourn times from models for
cause-specific rates.
Diet and heart data
Function to calculate effects for individually matched case-control studies
Cut follow-up at a specified date for each person.
Compute confidence limits for a difference of two independent proportions.
Function to calculate effects
Functions to convert character, factor and various date objects into a number,
and vice versa.
Conditional logistic regression
Projection of a model matrix on the orthogonal
complement of a trend or curvature.
Create a data structures suitable for use with packages mstate or etm.
Compute survival functions from rates and expected residual
lifetime in an illness-death model as well as years of life lost to disease.
Fit a floating trend to a factor in generalized linear model
Calculate floated variances
Fits a multiplicative relative risk model to interval censored data.
Fit a competing risks regression model (Fine-Gray model) using a
Lexis object)
Rates of lung and nasal cancer mortality, and total mortality.
Function to expand data for regression analysis of interval censored
data.
Contrast matrices
Is x in the column span of matrix A and what columns are
linearly dependent?
Plot columns of a matrix as stacked areas.
Fit an addive excess risk model to interval censored data.
An unmatched case-control study of leprosy incidence
Generate covariates for drug-exposure follow-up from drug purchase records.
Population mortality rates for Denmark in 5-years age groups.
hivDK: seroconversion in a cohort of Danish men
Create a basis of harmonic functions.
Population mortality rates for Denmark in 1-year age-classes.
A small occupational cohort
Fit a piecewise contsnt intesity model for interval censored data.
Plot period and cohort effects in an APC-frame.
Function to group a variable in intervals.
Functions to manage and explore the workspace
A Cohort of Nickel Smelters in South Wales
Nice breakpoints
Plot confidence intervals as shaded areas around lines.
Mantel-Haenszel analyses of cohort and case-control studies
Plot the estimates from a fitted Age-Period-Cohort model
Fit intensity models to follow-up data in Lexis objects
Plotting Aalen-Johansen curves for competing events
Family Object for Poisson Regression
Diabetes prevance as of 2010-01-01 in Denmark
Male lung cancer incidence in Denmark
Projection of columns of a matrix.
Functions to plot rates from a table classified by age and
calendar time (period)
Lexis diagrams
Create percentages in a table
Convenience versions of grep
Clinical trial: Steno2 baseline and follow-up.
Combining a Lexis objects with data frames or other Lexis objects
Split follow-up time in a Lexis object
Functions to facilitate analysis of multistate models.
Special functions for use in stat.table
Plot APC-estimates in an APC-frame.
Cut follow-up at multiple event dates and keep track of order of events
Merge a Lexis object with a data frame
Subsetting Lexis (and stacked.Lexis) objects
Plot estimates with confidence limits (forest plot)
Transform a Lexis (or stacked.Lexis) object
Analysis of a two by two table
Tables of summary statistics
Remove transitions from a Lexis object.
A function to cut follow-up at intermediate event times.
Time series and other methods for Lexis objects
Plot Equivalence Classes
Extract time band data from a split Lexis object
The time scales of a Lexis object
Summarize transitions and risk time from a Lexis object
Simulate a Lexis object representing follow-up in a multistate
model.
Testis cancer incidence in Denmark, 1943--1996
Thorotrast Study