OverallInfectivity

Please only use for compatibility;
Prefer the new overall_infectivity function instead

Tools to quantify transmissibility throughout
an epidemic from the analysis of time series of incidence as described in
Cori et al. (2013) <doi:10.1093/aje/kwt133> and Wallinga and Teunis (2004)
<doi:10.1093/aje/kwh255>.

Anne Cori

EpiEstim

Estimate Time Varying Reproduction Numbers from Epidemic Curves

Simon Cauchemez

Neil M. Ferguson

Christophe Fraser

Elisabeth Dahlqwist

P. Alex Demarsh

Thibaut Jombart

Zhian N. Kamvar

Justin Lessler

Shikun Li

Jonathan A. Polonsky

Jake Stockwin

Robin Thompson

Rolina van Gaalen

OverallInfectivity function

<dl><dt>I</dt>
<dd>see <code>incid</code> in <code>overall_infectivity</code></dd>
<dt>SI.Distr</dt>
<dd>see <code>si_distr</code> in <code>overall_infectivity</code></dd></dl>

Arguments

Function to ensure compatibility with EpiEstim versions &lt;2.0 — OverallInfectivity

<dl>

<dt>I</dt>
<dd>see <code>incid</code> in <code>overall_infectivity</code></dd>


<dt>SI.Distr</dt>
<dd>see <code>si_distr</code> in <code>overall_infectivity</code></dd>

</dl>

Function to ensure compatibility with EpiEstim versions &lt;2.0

OverallInfectivity: Function to ensure compatibility with EpiEstim versions <2.0

Description

Usage

Arguments