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EpiModel (version 0.95)
Mathematical Modeling of Infectious Disease
Description
Tools for building, solving, and plotting mathematical models of infectious disease.
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Install
install.packages('EpiModel')
Monthly Downloads
933
Version
0.95
License
GPL-2
Maintainer
Samuel M Jenness
Last Published
January 23rd, 2014
Functions in EpiModel (0.95)
Search all functions
edgelist.meanage
Mean Age of Partnerships over Time
deaths.inf
Deaths for Infecteds: epiNet.simTrans Module
epiNet.simNet
Simulate Networks from STERGM Model Fit
epiNet.simTrans
Stochastic Network Epidemic Models
summary.epiICM
Summary Model Statistics
transco
Obtain Transparent Colors
merge.epiICM
Merge Model Simulations Across epiICM Objects
deaths.sus
Deaths for Suceptibles: epiNet.simTrans Module
births
Births: epiNet.simTrans Module
deaths.rec
Deaths for Recovered: epiNet.simTrans Module
edgelist.censor
Table of Partnership Censoring
set.nodematch.attributes
Set Nodematch Values from Proportions
get.stat
Get Active Status from NetworkDynamic Object
get.prev
Get State Size from a NetworkDynamic Object
bip.degdist.check
Check Degree Distribution for Bipartite Target Statistics
as.data.frame.epiICM
Extract Model Run for Stochastic Models
plot.epiNet.est
Plot Diagnostics from an epiNet.est Object
epiDCM
Deterministic Compartmental Epidemic Models
colorTEA
Creates a TEA Variable for Infection Status for
ndtv
Animations
dissolution.coefs
Calcuate Dissolution Coefficients for Stochastic Network Models
epiICM
Individual Contact Epidemic Models
summary.epiDCM
Summary Model Statistics
plot.epiDCM
Plot Values from a Deterministic Compartmental Epidemic Model
brewer.ramp
RColorBrewer Color Ramp for EpiModel Plots
infection
Primary Infection Module for epiNet.simTrans
gui.epiDCM
GUI for epiDCM Models
plot.epiICM
Plot Simulations from a Individual Contact Epidemic Model
summary.epiNet.simTrans
Summary Model Statistics
discord.edgelist
Discordant Edgelist from NetworkDynamic Object
summary.epiNet.est
Summary for Network Model Fit
conc.microsim
Concurrency Microsimulation Model for HIV-1 Transmission Dynamics
modeids
ID Numbers for Bipartite Network
plot.conc.microsim
Plot Values from a Concurrency Microsimulation Model
merge.epiNet.simTrans
Merge Model Simulations Across epiNet.simTrans Objects
comp.plot
Plot Compartment Diagram from Deterministic or Stochastic Model
init.inf.time
Infection Time Module for epiNet.simTrans
node.active
Query Active Nodes in NetworkDynamic Object
idmode
Mode Numbers for Bipartite Network
plot.epiNet.simNet
Plot Diagnostics from an epiNet.simNet Object
get.nodematch.attributes
Get Nodematch Term Proportions
EpiModel-package
Mathematical Modeling of Infectious Disease
as.data.frame.epiDCM
Extract Model Run for epiDCM Object
epiNet.est
Stochastic Network Estimation with STERGM
recovery
Recovery: epiNet.simTrans Module
init.pids
Persistent ID Initialization
plot.epiNet.simTrans
Plot Simulations from a Stochastic Network Epidemic Model
bipvals
Vertex Attributes for Bipartite Network
init.status
Disease Status Initialization Module for epiNet.simTrans
epiNetModules
Modules for Stochastic Network Models