as.network.transmat

an object of class <code>transmat</code> to be converted into a network
object

Converts the edges of the infection tree described in the
 <code><a rd-options="" href="/link/transmat?package=EpiModel&version=2.2.0" data-mini-rdoc="EpiModel::transmat">transmat</a></code> object into a <code><a rd-options="" href="/link/network?package=EpiModel&version=2.2.0" data-mini-rdoc="EpiModel::network">network</a></code>
 object, copying in appropriate edge attributes for 'at',
 'infDur', 'transProb', 'actRate', and 'finalProb' and
 constructing a vertex attribute for 'at'.

Tools for simulating mathematical models of infectious disease dynamics.
Epidemic model classes include deterministic compartmental models, stochastic
individual-contact models, and stochastic network models. Network models use the
robust statistical methods of exponential-family random graph models (ERGMs)
from the Statnet suite of software packages in R. Standard templates for epidemic
modeling include SI, SIR, and SIS disease types. EpiModel features an API for
extending these templates to address novel scientific research aims. Full
methods for EpiModel are detailed in Jenness et al. (2018, <doi:10.18637/jss.v084.i08>).

Samuel Jenness

EpiModel

Mathematical Modeling of Infectious Disease Dynamics

Steven M. Goodreau

Martina Morris

Adrien Le Guillou

Skye Bender-deMoll

Chad Klumb

as.network.transmat function

Converts the edges of the infection tree described in the
 <code><a rd-options='' href='transmat'>transmat</a></code> object into a <code><a rd-options='' href='network'>network</a></code>
 object, copying in appropriate edge attributes for 'at',
 'infDur', 'transProb', 'actRate', and 'finalProb' and
 constructing a vertex attribute for 'at'.

as.network.transmat: Converts transmat infection tree into a network object

Description

Usage

Arguments