netsim_loop

This function run the initialization and simulation loop for one
 simulation. Error, warning and messages are pretty printed using
 the `netsim_cond_msg` (utils.R)

internal

Tools for simulating mathematical models of infectious disease dynamics.
Epidemic model classes include deterministic compartmental models, stochastic
individual-contact models, and stochastic network models. Network models use the
robust statistical methods of exponential-family random graph models (ERGMs)
from the Statnet suite of software packages in R. Standard templates for epidemic
modeling include SI, SIR, and SIS disease types. EpiModel features an API for
extending these templates to address novel scientific research aims. Full
methods for EpiModel are detailed in Jenness et al. (2018, <doi:10.18637/jss.v084.i08>).

Samuel Jenness

EpiModel

Mathematical Modeling of Infectious Disease Dynamics

Steven M. Goodreau

Martina Morris

Adrien Le Guillou

Skye Bender-deMoll

Chad Klumb

netsim_loop function

<dl><dt>x</dt>
<dd>An <code>EpiModel</code> object of class <code>netest</code>.</dd>
<dt>param</dt>
<dd>An <code>EpiModel</code> object of class <code>param.net</code>.</dd>
<dt>init</dt>
<dd>An <code>EpiModel</code> object of class <code>init.net</code>.</dd>
<dt>control</dt>
<dd>An <code>EpiModel</code> object of class <code>control.net</code>.</dd>
<dt>s</dt>
<dd>Simulation number, used for restarting dependent simulations.</dd></dl>

Arguments

Internal function running the network simulation loop — netsim_loop

<dl>

<dt>x</dt>
<dd>An <code>EpiModel</code> object of class <code>netest</code>.</dd>


<dt>param</dt>
<dd>An <code>EpiModel</code> object of class <code>param.net</code>.</dd>


<dt>init</dt>
<dd>An <code>EpiModel</code> object of class <code>init.net</code>.</dd>


<dt>control</dt>
<dd>An <code>EpiModel</code> object of class <code>control.net</code>.</dd>


<dt>s</dt>
<dd>Simulation number, used for restarting dependent simulations.</dd>

</dl>

netsim_loop: Internal function running the network simulation loop

Description

Usage

Arguments