set_transmat

This function appends the transmission matrix created during
<code>infection.net</code> and <code>infection.2g.net</code>.

Tools for simulating mathematical models of infectious disease dynamics.
Epidemic model classes include deterministic compartmental models, stochastic
individual-contact models, and stochastic network models. Network models use the
robust statistical methods of exponential-family random graph models (ERGMs)
from the Statnet suite of software packages in R. Standard templates for epidemic
modeling include SI, SIR, and SIS disease types. EpiModel features an API for
extending these templates to address novel scientific research aims. Full
methods for EpiModel are detailed in Jenness et al. (2018, <doi:10.18637/jss.v084.i08>).

Samuel Jenness

EpiModel

Mathematical Modeling of Infectious Disease Dynamics

Steven M. Goodreau

Martina Morris

Adrien Le Guillou

Chad Klumb

Skye Bender-deMoll

set_transmat function

<dl><dt>dat</dt>
<dd>Main list object containing a <code>networkDynamic</code> object and
other initialization information passed from <code>netsim</code>.</dd>
<dt>del</dt>
<dd>Discordant edgelist created within <code>infection.net</code> and
<code>infection.2g.net</code>.</dd>
<dt>at</dt>
<dd>Current time step.</dd></dl>

Arguments

Save Transmission Matrix — set_transmat

<dl>

<dt>dat</dt>
<dd>Main list object containing a <code>networkDynamic</code> object and
other initialization information passed from <code>netsim</code>.</dd>


<dt>del</dt>
<dd>Discordant edgelist created within <code>infection.net</code> and
<code>infection.2g.net</code>.</dd>


<dt>at</dt>
<dd>Current time step.</dd>

</dl>

set_transmat: Save Transmission Matrix

Description

Usage

Value

Arguments

Details