initialize.net

This function initializes the main <code>netsim_dat</code> class data
object on which data are stored, simulates the initial state of
the networks, and simulates disease status and other attributes.

internal

Tools for simulating mathematical models of infectious disease dynamics.
Epidemic model classes include deterministic compartmental models, stochastic
individual-contact models, and stochastic network models. Network models use the
robust statistical methods of exponential-family random graph models (ERGMs)
from the Statnet suite of software packages in R. Standard templates for epidemic
modeling include SI, SIR, and SIS disease types. EpiModel features an API for
extending these templates to address novel scientific research aims. Full
methods for EpiModel are detailed in Jenness et al. (2018, <doi:10.18637/jss.v084.i08>).

Samuel Jenness

EpiModel

Mathematical Modeling of Infectious Disease Dynamics

Steven M. Goodreau

Martina Morris

Adrien Le Guillou

Chad Klumb

Skye Bender-deMoll

initialize.net function

<dl><dt>x</dt>
<dd>If <code>control$start == 1</code>, either a fitted network model object
of class <code>netest</code> or a list of such objects. If
<code>control$start &gt; 1</code>, an object of class <code>netsim</code>. When
multiple networks are used, the node sets (including network size
and nodal attributes) are assumed to be the same for all networks.</dd>
<dt>param</dt>
<dd>An <code>EpiModel</code> object of class <code>param.net</code>.</dd>
<dt>init</dt>
<dd>An <code>EpiModel</code> object of class <code>init.net</code>.</dd>
<dt>control</dt>
<dd>An <code>EpiModel</code> object of class <code>control.net</code>.</dd>
<dt>s</dt>
<dd>Simulation number, used for restarting dependent simulations.</dd></dl>

Arguments

Initialization: netsim Module — initialize.net

<dl>

<dt>x</dt>
<dd>If <code>control$start == 1</code>, either a fitted network model object
of class <code>netest</code> or a list of such objects. If
<code>control$start &gt; 1</code>, an object of class <code>netsim</code>. When
multiple networks are used, the node sets (including network size
and nodal attributes) are assumed to be the same for all networks.</dd>


<dt>param</dt>
<dd>An <code>EpiModel</code> object of class <code>param.net</code>.</dd>


<dt>init</dt>
<dd>An <code>EpiModel</code> object of class <code>init.net</code>.</dd>


<dt>control</dt>
<dd>An <code>EpiModel</code> object of class <code>control.net</code>.</dd>


<dt>s</dt>
<dd>Simulation number, used for restarting dependent simulations.</dd>

</dl>

initialize.net: Initialization: netsim Module

Description

Usage

Value

Arguments

Details