unique_id-tools

get_unique_ids

get_posit_ids

EpiModel refers to its nodes either by positional identifiers
(<code>posit_ids</code>), which describe the position of a node in the
<code>attr</code> vector, or by unique identifiers
(<code>unique_ids</code>), which allow references to nodes even after
they are deactivated.

Tools for simulating mathematical models of infectious disease dynamics.
Epidemic model classes include deterministic compartmental models, stochastic
individual-contact models, and stochastic network models. Network models use the
robust statistical methods of exponential-family random graph models (ERGMs)
from the Statnet suite of software packages in R. Standard templates for epidemic
modeling include SI, SIR, and SIS disease types. EpiModel features an API for
extending these templates to address novel scientific research aims. Full
methods for EpiModel are detailed in Jenness et al. (2018, <doi:10.18637/jss.v084.i08>).

Samuel Jenness

EpiModel

Mathematical Modeling of Infectious Disease Dynamics

Steven M. Goodreau

Martina Morris

Adrien Le Guillou

Chad Klumb

Skye Bender-deMoll

unique_id-tools function

<dl><dt>dat</dt>
<dd>Main <code>netsim_dat</code> object containing a <code>networkDynamic</code>
object and other initialization information passed from
<code>netsim</code>.</dd>
<dt>posit_ids</dt>
<dd>A vector of node positional identifiers (default = NULL).</dd>
<dt>unique_ids</dt>
<dd>A vector of node unique identifiers (default = NULL).</dd></dl>

Arguments

When <code>unique_ids</code> or <code>posit_ids</code> is NULL (default)
the full list of positional IDs or unique IDs is returned.

All elements

When providing <code>unique_ids</code> of deactivated nodes to
<code>get_posit_ids</code>, <code>NA</code>s are returned instead and a warning is
produced.

Deactivated nodes

Convert Unique Identifiers to/from Positional Identifiers — unique_id-tools

<dl>

<dt>dat</dt>
<dd>Main <code>netsim_dat</code> object containing a <code>networkDynamic</code>
object and other initialization information passed from
<code>netsim</code>.</dd>


<dt>posit_ids</dt>
<dd>A vector of node positional identifiers (default = NULL).</dd>


<dt>unique_ids</dt>
<dd>A vector of node unique identifiers (default = NULL).</dd>

</dl>

When <code>unique_ids</code> or <code>posit_ids</code> is NULL (default)
the full list of positional IDs or unique IDs is returned.

When providing <code>unique_ids</code> of deactivated nodes to
<code>get_posit_ids</code>, <code>NA</code>s are returned instead and a warning is
produced.

unique_id-tools: Convert Unique Identifiers to/from Positional Identifiers

Description

Usage

Value

Arguments

All elements

Deactivated nodes