extract_parameter

Character string indicating the parameter to extract

param

Extracted stan model (using <code>rstan::extract</code>)

samples

A vector identifying the dimensionality of the parameter to extract. Generally this will be
a date

dates

Extracts a single from a list of <code>stan</code> output and returns it as a <code>data.table</code>.

Estimates the time-varying reproduction number, rate of spread,
and doubling time using a range of open-source tools (Abbott et al. (2020) <doi:10.12688/wellcomeopenres.16006.1>),
and current best practices (Gostic et al. (2020) <doi:10.1101/2020.06.18.20134858>).
It aims to help users avoid some of the limitations of naive implementations in a framework
that is informed by community feedback and is under active development.

Sam Abbott 

EpiNow2

Estimate Real-Time Case Counts and Time-Varying Epidemiological
Parameters

Sam Abbott

Joel Hellewell

Katharine Sherratt

Katelyn Gostic

Joe Hickson

Hamada S. Badr

Michael DeWitt

Robin Thompson

Sophie Meakin

James Munday

Nikos Bosse

Paul Mee

Peter Ellis

EpiForecasts 

Sebastian Funk

extract_parameter function

Extract Samples for a Parameter from a Stan model — extract_parameter

Extract Samples for a Parameter from a Stan model

extract_parameter: Extract Samples for a Parameter from a Stan model

Description

Usage

Arguments

Value