plot.estimate_secondary

A list of output as produced by <code>estimate_secondary</code>

Logical, defaults to <code>FALSE</code>. Should <code>primary</code> reports also
be plot?

primary

Date object indicating when to plot from.

from

Date object indicating when to plot up to.

A data.frame containing the columns <code>date</code> and <code>secondary</code> which replace
the secondary observations stored in the <code>estimate_secondary</code> output.

new_obs

Pass additional arguments to plot function. Not currently in use.

<code>plot</code> method for class "estimate_secondary".

Estimates the time-varying reproduction number, rate of spread,
and doubling time using a range of open-source tools (Abbott et al. (2020) <doi:10.12688/wellcomeopenres.16006.1>),
and current best practices (Gostic et al. (2020) <doi:10.1101/2020.06.18.20134858>).
It aims to help users avoid some of the limitations of naive implementations in a framework
that is informed by community feedback and is under active development.

Sam Abbott 

EpiNow2

Estimate Real-Time Case Counts and Time-Varying Epidemiological
Parameters

Sam Abbott

Joel Hellewell

plot.estimate_secondary: Plot method for estimate_secondary

Description

Usage

Arguments

Value

See Also