summary.estimate_infections

A list of output as produced by "estimate_infections".

object

A character vector of data types to return. Defaults to "snapshot"
but also supports "parameters". "snapshot" returns a summary at a given date
(by default the latest date informed by data). "parameters" returns summarised
parameter estimates that can be further filtered using <code>params</code> to show just the
parameters of interest and date.

type

A date in the form "yyyy-mm-dd" to inspect estimates for.

date

A character vector of parameters to filter for.

params

Pass additional arguments to <code>report_summary</code>

<code>summary</code> method for class "estimate_infections".

Estimates the time-varying reproduction number, rate of spread,
and doubling time using a range of open-source tools (Abbott et al. (2020) <doi:10.12688/wellcomeopenres.16006.1>),
and current best practices (Gostic et al. (2020) <doi:10.1101/2020.06.18.20134858>).
It aims to help users avoid some of the limitations of naive implementations in a framework
that is informed by community feedback and is under active development.

Sam Abbott 

EpiNow2

Estimate Real-Time Case Counts and Time-Varying Epidemiological
Parameters

Sam Abbott

Joel Hellewell

summary.estimate_infections: Summary output from estimate_infections

Description

Usage

Arguments

Value

See Also