expose_stan_fns

<a href="https://lifecycle.r-lib.org/articles/stages.html#stable"><img src="figures/lifecycle-stable.svg?package=EpiNow2&version=1.3.4" alt="[Stable]"></a>
his function exposes internal stan functions in R from a user
supplied list of target files. Allows for testing of stan functions in R and potentially
user use in R code.

Estimates the time-varying reproduction number,
rate of spread, and doubling time using a range of open-source tools
(Abbott et al. (2020) <doi:10.12688/wellcomeopenres.16006.1>), and
current best practices (Gostic et al. (2020)
<doi:10.1101/2020.06.18.20134858>). It aims to help users avoid some
of the limitations of naive implementations in a framework that is
informed by community feedback and is actively supported.

Sam Abbott 

EpiNow2

Estimate Real-Time Case Counts and Time-Varying Epidemiological
Parameters

Sam Abbott

Joel Hellewell

Katharine Sherratt

Katelyn Gostic

Joe Hickson

Hamada S. Badr

Michael DeWitt

Robin Thompson

Sophie Meakin

James Munday

Nikos Bosse

Paul Mee

Peter Ellis

Pietro Monticone

Lloyd Chapman

EpiForecasts 

Sebastian Funk

expose_stan_fns function

<dl><dt>files</dt>
<dd>A character vector indicating the target files</dd>
<dt>target_dir</dt>
<dd>A character string indicating the target directory for the file</dd>
<dt>...</dt>
<dd>Additional arguments passed to <code>rstan::expose_stan_functions</code>.</dd></dl>

Arguments

<a href='https://lifecycle.r-lib.org/articles/stages.html#stable'><img src='figures/lifecycle-stable.svg' alt='[Stable]' /></a>
his function exposes internal stan functions in R from a user
supplied list of target files. Allows for testing of stan functions in R and potentially
user use in R code.

Expose internal package stan functions in R — expose_stan_fns

<dl>

<dt>files</dt>
<dd>A character vector indicating the target files</dd>


<dt>target_dir</dt>
<dd>A character string indicating the target directory for the file</dd>


<dt>...</dt>
<dd>Additional arguments passed to <code>rstan::expose_stan_functions</code>.</dd>

</dl>

Expose internal package stan functions in R

expose_stan_fns: Expose internal package stan functions in R

Description

Usage

Value

Arguments