get_regions_with_most_reports

<a href="https://lifecycle.r-lib.org/articles/stages.html#stable"><img src="figures/lifecycle-stable.svg?package=EpiNow2&version=1.3.4" alt="[Stable]"></a>
Extract a vector of regions with the most reported cases in a set time
window.

Estimates the time-varying reproduction number,
rate of spread, and doubling time using a range of open-source tools
(Abbott et al. (2020) <doi:10.12688/wellcomeopenres.16006.1>), and
current best practices (Gostic et al. (2020)
<doi:10.1101/2020.06.18.20134858>). It aims to help users avoid some
of the limitations of naive implementations in a framework that is
informed by community feedback and is actively supported.

Sam Abbott 

EpiNow2

Estimate Real-Time Case Counts and Time-Varying Epidemiological
Parameters

Sam Abbott

Joel Hellewell

Katharine Sherratt

Katelyn Gostic

Joe Hickson

Hamada S. Badr

Michael DeWitt

Robin Thompson

Sophie Meakin

James Munday

Nikos Bosse

Paul Mee

Peter Ellis

Pietro Monticone

Lloyd Chapman

EpiForecasts 

Sebastian Funk

get_regions_with_most_reports function

<dl><dt>reported_cases</dt>
<dd>A data frame of confirmed cases (confirm) by date (date), and region (<code>region</code>).</dd>
<dt>time_window</dt>
<dd>Numeric, number of days to include from latest date in
data. Defaults to 7 days.</dd>
<dt>no_regions</dt>
<dd>Numeric, number of regions to return. Defaults to 6.</dd></dl>

Arguments

Author

<a href='https://lifecycle.r-lib.org/articles/stages.html#stable'><img src='figures/lifecycle-stable.svg' alt='[Stable]' /></a>
Extract a vector of regions with the most reported cases in a set time
window.

Get Regions with Most Reported Cases — get_regions_with_most_reports

<dl>

<dt>reported_cases</dt>
<dd>A data frame of confirmed cases (confirm) by date (date), and region (<code>region</code>).</dd>


<dt>time_window</dt>
<dd>Numeric, number of days to include from latest date in
data. Defaults to 7 days.</dd>


<dt>no_regions</dt>
<dd>Numeric, number of regions to return. Defaults to 6.</dd>

</dl>

Get Regions with Most Reported Cases

get_regions_with_most_reports: Get Regions with Most Reported Cases

Description

Usage

Value

Arguments

Author