plot.estimate_infections

plot

<a href="https://lifecycle.r-lib.org/articles/stages.html#maturing"><img src="figures/lifecycle-maturing.svg?package=EpiNow2&version=1.3.4" alt="[Maturing]"></a>
<code>plot</code> method for class "estimate_infections".

Estimates the time-varying reproduction number,
rate of spread, and doubling time using a range of open-source tools
(Abbott et al. (2020) <doi:10.12688/wellcomeopenres.16006.1>), and
current best practices (Gostic et al. (2020)
<doi:10.1101/2020.06.18.20134858>). It aims to help users avoid some
of the limitations of naive implementations in a framework that is
informed by community feedback and is actively supported.

Sam Abbott 

EpiNow2

Estimate Real-Time Case Counts and Time-Varying Epidemiological
Parameters

Sam Abbott

Joel Hellewell

Katharine Sherratt

Katelyn Gostic

Joe Hickson

Hamada S. Badr

Michael DeWitt

Robin Thompson

Sophie Meakin

James Munday

Nikos Bosse

Paul Mee

Peter Ellis

Pietro Monticone

Lloyd Chapman

EpiForecasts 

Sebastian Funk

plot.estimate_infections function

<dl><dt>x</dt>
<dd>A list of output as produced by <code>estimate_infections</code></dd>
<dt>type</dt>
<dd>A character vector indicating the name of plots to return. Defaults
to "summary" with supported options being "infections", "reports", "R", "growth_rate",
"summary", "all".</dd>
<dt>...</dt>
<dd>Pass additional arguments to report_plots</dd></dl>

Arguments

<a href='https://lifecycle.r-lib.org/articles/stages.html#maturing'><img src='figures/lifecycle-maturing.svg' alt='[Maturing]' /></a>
<code>plot</code> method for class "estimate_infections".

Plot method for estimate_infections — plot.estimate_infections

<dl>

<dt>x</dt>
<dd>A list of output as produced by <code>estimate_infections</code></dd>


<dt>type</dt>
<dd>A character vector indicating the name of plots to return. Defaults
to "summary" with supported options being "infections", "reports", "R", "growth_rate",
"summary", "all".</dd>


<dt>...</dt>
<dd>Pass additional arguments to report_plots</dd>

</dl>

Plot method for estimate_infections

plot.estimate_infections: Plot method for estimate_infections

Description

Usage

Value

Arguments

See Also