plot_summary

<a href="https://lifecycle.r-lib.org/articles/stages.html#questioning"><img src="figures/lifecycle-questioning.svg?package=EpiNow2&version=1.3.4" alt="[Questioning]"></a>
Used to return a summary plot across regions (using results generated by <code>summarise_results</code>).
May be depreciated in later releases in favour of enhanced S3 methods.

Estimates the time-varying reproduction number,
rate of spread, and doubling time using a range of open-source tools
(Abbott et al. (2020) <doi:10.12688/wellcomeopenres.16006.1>), and
current best practices (Gostic et al. (2020)
<doi:10.1101/2020.06.18.20134858>). It aims to help users avoid some
of the limitations of naive implementations in a framework that is
informed by community feedback and is actively supported.

Sam Abbott 

EpiNow2

Estimate Real-Time Case Counts and Time-Varying Epidemiological
Parameters

Sam Abbott

Joel Hellewell

Katharine Sherratt

Katelyn Gostic

Joe Hickson

Hamada S. Badr

Michael DeWitt

Robin Thompson

Sophie Meakin

James Munday

Nikos Bosse

Paul Mee

Peter Ellis

Pietro Monticone

Lloyd Chapman

EpiForecasts 

Sebastian Funk

plot_summary function

<dl><dt>summary_results</dt>
<dd>A data.table as returned by <code>summarise_results</code> (the <code>data</code> object).</dd>
<dt>x_lab</dt>
<dd>A character string giving the label for the x axis, defaults to region.</dd>
<dt>log_cases</dt>
<dd>Logical, should cases be shown on a logged scale. Defaults to <code>FALSE</code></dd>
<dt>max_cases</dt>
<dd>Numeric, no default. The maximum number of cases to plot.</dd></dl>

Arguments

<a href='https://lifecycle.r-lib.org/articles/stages.html#questioning'><img src='figures/lifecycle-questioning.svg' alt='[Questioning]' /></a>
Used to return a summary plot across regions (using results generated by <code>summarise_results</code>).
May be depreciated in later releases in favour of enhanced S3 methods.

Plot a Summary of the Latest Results — plot_summary

<dl>

<dt>summary_results</dt>
<dd>A data.table as returned by <code>summarise_results</code> (the <code>data</code> object).</dd>


<dt>x_lab</dt>
<dd>A character string giving the label for the x axis, defaults to region.</dd>


<dt>log_cases</dt>
<dd>Logical, should cases be shown on a logged scale. Defaults to <code>FALSE</code></dd>


<dt>max_cases</dt>
<dd>Numeric, no default. The maximum number of cases to plot.</dd>

</dl>

Plot a Summary of the Latest Results

plot_summary: Plot a Summary of the Latest Results

Description

Usage

Value

Arguments