setup_dt

<a href="https://lifecycle.r-lib.org/articles/stages.html#stable"><img src="figures/lifecycle-stable.svg?package=EpiNow2&version=1.3.4" alt="[Stable]"></a>
Convenience function that sets the number of <code>data.table</code> cores to 1 and
maps input to be a <code>data.table</code>

Estimates the time-varying reproduction number,
rate of spread, and doubling time using a range of open-source tools
(Abbott et al. (2020) <doi:10.12688/wellcomeopenres.16006.1>), and
current best practices (Gostic et al. (2020)
<doi:10.1101/2020.06.18.20134858>). It aims to help users avoid some
of the limitations of naive implementations in a framework that is
informed by community feedback and is actively supported.

Sam Abbott 

EpiNow2

Estimate Real-Time Case Counts and Time-Varying Epidemiological
Parameters

Sam Abbott

Joel Hellewell

Katharine Sherratt

Katelyn Gostic

Joe Hickson

Hamada S. Badr

Michael DeWitt

Robin Thompson

Sophie Meakin

James Munday

Nikos Bosse

Paul Mee

Peter Ellis

Pietro Monticone

Lloyd Chapman

EpiForecasts 

Sebastian Funk

setup_dt function

<dl><dt>reported_cases</dt>
<dd>A data frame of confirmed cases (confirm) by date
(date). confirm must be integer and date must be in date format.</dd></dl>

Arguments

<a href='https://lifecycle.r-lib.org/articles/stages.html#stable'><img src='figures/lifecycle-stable.svg' alt='[Stable]' /></a>
Convenience function that sets the number of <code>data.table</code> cores to 1 and
maps input to be a <code>data.table</code>

Convert to Data Table — setup_dt

<dl>

<dt>reported_cases</dt>
<dd>A data frame of confirmed cases (confirm) by date
(date). confirm must be integer and date must be in date format.</dd>

</dl>

Convert to Data Table

setup_dt: Convert to Data Table

Description

Usage

Value

Arguments