get_seeding_time

The seeding time is set to the mean of the specified delays, constrained
to be at least the maximum generation time

Estimates the time-varying reproduction number,
rate of spread, and doubling time using a range of open-source tools
(Abbott et al. (2020) <doi:10.12688/wellcomeopenres.16006.1>), and
current best practices (Gostic et al. (2020)
<doi:10.1101/2020.06.18.20134858>). It aims to help users avoid some
of the limitations of naive implementations in a framework that is
informed by community feedback and is actively supported.

Sam Abbott 

EpiNow2

Estimate Real-Time Case Counts and Time-Varying Epidemiological
Parameters

Sam Abbott

Joel Hellewell

Katharine Sherratt

Katelyn Gostic

Joe Hickson

Hamada S. Badr

Michael DeWitt

Robin Thompson

Sophie Meakin

James Munday

Nikos Bosse

Paul Mee

Peter Ellis

Pietro Monticone

Lloyd Chapman

James M. Azam

Andrew Johnson

EpiForecasts 

Sebastian Funk

get_seeding_time function

<dl><dt>delays</dt>
<dd>Delays as specified using <code>dist_spec</code></dd>
<dt>generation_time</dt>
<dd>Generation time as specified using <code>dist_spec</code></dd></dl>

Arguments

Author

Estimate seeding time from delays and generation time — get_seeding_time

<dl>

<dt>delays</dt>
<dd>Delays as specified using <code>dist_spec</code></dd>


<dt>generation_time</dt>
<dd>Generation time as specified using <code>dist_spec</code></dd>

</dl>

Estimate seeding time from delays and generation time

get_seeding_time: Estimate seeding time from delays and generation time

Description

Usage

Value

Arguments

Author