calc_CrI

<a href="https://lifecycle.r-lib.org/articles/stages.html#stable"><img src="figures/lifecycle-stable.svg?package=EpiNow2&version=1.6.1" alt="[Stable]"></a>
Adds symmetric a credible interval based on quantiles.

Estimates the time-varying reproduction number,
rate of spread, and doubling time using a range of open-source tools
(Abbott et al. (2020) <doi:10.12688/wellcomeopenres.16006.1>), and
current best practices (Gostic et al. (2020)
<doi:10.1101/2020.06.18.20134858>). It aims to help users avoid some
of the limitations of naive implementations in a framework that is
informed by community feedback and is actively supported.

Sebastian Funk

EpiNow2

Estimate Real-Time Case Counts and Time-Varying Epidemiological
Parameters

Sam Abbott

Joel Hellewell

Katharine Sherratt

Katelyn Gostic

Joe Hickson

Hamada S. Badr

Michael DeWitt

James M. Azam

Robin Thompson

Sophie Meakin

James Munday

Nikos Bosse

Paul Mee

Peter Ellis

Pietro Monticone

Lloyd Chapman

Andrew Johnson

Kaitlyn Johnson

EpiForecasts 

calc_CrI function

<dl><dt>samples</dt>
<dd>A data.table containing at least a value variable</dd>
<dt>summarise_by</dt>
<dd>A character vector of variables to group by.</dd>
<dt>CrI</dt>
<dd>Numeric between 0 and 1. The credible interval for which to
return values. Defaults to 0.9.</dd></dl>

Arguments

<a href='https://lifecycle.r-lib.org/articles/stages.html#stable'><img src='figures/lifecycle-stable.svg' alt='[Stable]' /></a>
Adds symmetric a credible interval based on quantiles.

Calculate Credible Interval — calc_CrI

<dl>

<dt>samples</dt>
<dd>A data.table containing at least a value variable</dd>


<dt>summarise_by</dt>
<dd>A character vector of variables to group by.</dd>


<dt>CrI</dt>
<dd>Numeric between 0 and 1. The credible interval for which to
return values. Defaults to 0.9.</dd>

</dl>

Calculate Credible Interval

calc_CrI: Calculate Credible Interval

Description

Usage

Value

Arguments

Examples