estimates_by_report_date

<a href="https://lifecycle.r-lib.org/articles/stages.html#questioning"><img src="figures/lifecycle-questioning.svg?package=EpiNow2&version=1.6.1" alt="[Questioning]"></a>
Either extracts or converts reported cases from an input data table. For
output from <code>estimate_infections</code> this is a simple filtering step.

internal

Estimates the time-varying reproduction number,
rate of spread, and doubling time using a range of open-source tools
(Abbott et al. (2020) <doi:10.12688/wellcomeopenres.16006.1>), and
current best practices (Gostic et al. (2020)
<doi:10.1101/2020.06.18.20134858>). It aims to help users avoid some
of the limitations of naive implementations in a framework that is
informed by community feedback and is actively supported.

Sebastian Funk

EpiNow2

Estimate Real-Time Case Counts and Time-Varying Epidemiological
Parameters

Sam Abbott

Joel Hellewell

Katharine Sherratt

Katelyn Gostic

Joe Hickson

Hamada S. Badr

Michael DeWitt

James M. Azam

Robin Thompson

Sophie Meakin

James Munday

Nikos Bosse

Paul Mee

Peter Ellis

Pietro Monticone

Lloyd Chapman

Andrew Johnson

Kaitlyn Johnson

EpiForecasts 

estimates_by_report_date function

<dl><dt>estimates</dt>
<dd>List of data frames as output by <code>estimate_infections</code></dd>
<dt>CrIs</dt>
<dd>Numeric vector of credible intervals to calculate.</dd>
<dt>target_folder</dt>
<dd>Character string specifying where to save results (will
create if not present).</dd>
<dt>samples</dt>
<dd>Logical, defaults to TRUE. Should samples be saved</dd></dl>

Arguments

<a href='https://lifecycle.r-lib.org/articles/stages.html#questioning'><img src='figures/lifecycle-questioning.svg' alt='[Questioning]' /></a>
Either extracts or converts reported cases from an input data table. For
output from <code>estimate_infections</code> this is a simple filtering step.

Estimate Cases by Report Date — estimates_by_report_date

<dl>

<dt>estimates</dt>
<dd>List of data frames as output by <code>estimate_infections</code></dd>


<dt>CrIs</dt>
<dd>Numeric vector of credible intervals to calculate.</dd>


<dt>target_folder</dt>
<dd>Character string specifying where to save results (will
create if not present).</dd>


<dt>samples</dt>
<dd>Logical, defaults to TRUE. Should samples be saved</dd>

</dl>

Estimate Cases by Report Date

estimates_by_report_date: Estimate Cases by Report Date

Description

Usage

Value

Arguments