plot_CrIs

<a href="https://lifecycle.r-lib.org/articles/stages.html#stable"><img src="figures/lifecycle-stable.svg?package=EpiNow2&version=1.6.1" alt="[Stable]"></a>
Adds lineranges for user specified credible intervals

Estimates the time-varying reproduction number,
rate of spread, and doubling time using a range of open-source tools
(Abbott et al. (2020) <doi:10.12688/wellcomeopenres.16006.1>), and
current best practices (Gostic et al. (2020)
<doi:10.1101/2020.06.18.20134858>). It aims to help users avoid some
of the limitations of naive implementations in a framework that is
informed by community feedback and is actively supported.

Sebastian Funk

EpiNow2

Estimate Real-Time Case Counts and Time-Varying Epidemiological
Parameters

Sam Abbott

Joel Hellewell

Katharine Sherratt

Katelyn Gostic

Joe Hickson

Hamada S. Badr

Michael DeWitt

James M. Azam

Robin Thompson

Sophie Meakin

James Munday

Nikos Bosse

Paul Mee

Peter Ellis

Pietro Monticone

Lloyd Chapman

Andrew Johnson

Kaitlyn Johnson

EpiForecasts 

plot_CrIs function

<dl><dt>plot</dt>
<dd>A <code>{ggplot2}</code> plot</dd>
<dt>CrIs</dt>
<dd>Numeric list of credible intervals present in the data. As
produced by <code>extract_CrIs()</code>.</dd>
<dt>alpha</dt>
<dd>Numeric, overall alpha of the target line range</dd>
<dt>linewidth</dt>
<dd>Numeric, line width of the default line range.</dd></dl>

Arguments

<a href='https://lifecycle.r-lib.org/articles/stages.html#stable'><img src='figures/lifecycle-stable.svg' alt='[Stable]' /></a>
Adds lineranges for user specified credible intervals

Plot EpiNow2 Credible Intervals — plot_CrIs

<dl>

<dt>plot</dt>
<dd>A <code>{ggplot2}</code> plot</dd>


<dt>CrIs</dt>
<dd>Numeric list of credible intervals present in the data. As
produced by <code>extract_CrIs()</code>.</dd>


<dt>alpha</dt>
<dd>Numeric, overall alpha of the target line range</dd>


<dt>linewidth</dt>
<dd>Numeric, line width of the default line range.</dd>

</dl>

Plot EpiNow2 Credible Intervals

plot_CrIs: Plot EpiNow2 Credible Intervals

Description

Usage

Value

Arguments