report_summary

<a href="https://lifecycle.r-lib.org/articles/stages.html#questioning"><img src="figures/lifecycle-questioning.svg?package=EpiNow2&version=1.6.1" alt="[Questioning]"></a>
Creates a snapshot summary of estimates. May be removed in later releases as
S3 methods are enhanced.

Estimates the time-varying reproduction number,
rate of spread, and doubling time using a range of open-source tools
(Abbott et al. (2020) <doi:10.12688/wellcomeopenres.16006.1>), and
current best practices (Gostic et al. (2020)
<doi:10.1101/2020.06.18.20134858>). It aims to help users avoid some
of the limitations of naive implementations in a framework that is
informed by community feedback and is actively supported.

Sebastian Funk

EpiNow2

Estimate Real-Time Case Counts and Time-Varying Epidemiological
Parameters

Sam Abbott

Joel Hellewell

Katharine Sherratt

Katelyn Gostic

Joe Hickson

Hamada S. Badr

Michael DeWitt

James M. Azam

Robin Thompson

Sophie Meakin

James Munday

Nikos Bosse

Paul Mee

Peter Ellis

Pietro Monticone

Lloyd Chapman

Andrew Johnson

Kaitlyn Johnson

EpiForecasts 

report_summary function

<dl><dt>summarised_estimates</dt>
<dd>A data.table of summarised estimates containing
the following variables: variable, median, bottom, and top. It should
contain the following estimates: R, infections, and r (rate of growth).</dd>
<dt>rt_samples</dt>
<dd>A data.table containing Rt samples with the following
variables: sample and value.</dd>
<dt>target_folder</dt>
<dd>Character string specifying where to save results (will
create if not present).</dd>
<dt>return_numeric</dt>
<dd>Should numeric summary information be returned.</dd></dl>

Arguments

<a href='https://lifecycle.r-lib.org/articles/stages.html#questioning'><img src='figures/lifecycle-questioning.svg' alt='[Questioning]' /></a>
Creates a snapshot summary of estimates. May be removed in later releases as
S3 methods are enhanced.

Provide Summary Statistics for Estimated Infections and Rt — report_summary

<dl>

<dt>summarised_estimates</dt>
<dd>A data.table of summarised estimates containing
the following variables: variable, median, bottom, and top. It should
contain the following estimates: R, infections, and r (rate of growth).</dd>


<dt>rt_samples</dt>
<dd>A data.table containing Rt samples with the following
variables: sample and value.</dd>


<dt>target_folder</dt>
<dd>Character string specifying where to save results (will
create if not present).</dd>


<dt>return_numeric</dt>
<dd>Should numeric summary information be returned.</dd>

</dl>

Provide Summary Statistics for Estimated Infections and Rt

report_summary: Provide Summary Statistics for Estimated Infections and Rt

Description

Usage

Value

Arguments