setup_default_logging

<a href="https://lifecycle.r-lib.org/articles/stages.html#questioning"><img src="figures/lifecycle-questioning.svg?package=EpiNow2&version=1.6.1" alt="[Questioning]"></a>
Sets up default logging. Usage of logging is currently being explored as the
current setup cannot log stan errors or progress.

Estimates the time-varying reproduction number,
rate of spread, and doubling time using a range of open-source tools
(Abbott et al. (2020) <doi:10.12688/wellcomeopenres.16006.1>), and
current best practices (Gostic et al. (2020)
<doi:10.1101/2020.06.18.20134858>). It aims to help users avoid some
of the limitations of naive implementations in a framework that is
informed by community feedback and is actively supported.

Sebastian Funk

EpiNow2

Estimate Real-Time Case Counts and Time-Varying Epidemiological
Parameters

Sam Abbott

Joel Hellewell

Katharine Sherratt

Katelyn Gostic

Joe Hickson

Hamada S. Badr

Michael DeWitt

James M. Azam

Robin Thompson

Sophie Meakin

James Munday

Nikos Bosse

Paul Mee

Peter Ellis

Pietro Monticone

Lloyd Chapman

Andrew Johnson

Kaitlyn Johnson

EpiForecasts 

setup_default_logging function

<dl><dt>logs</dt>
<dd>Character path indicating the target folder in which to store log
information. Defaults to the temporary directory if not specified. Default
logging can be disabled if <code>logs</code> is set to NULL. If specifying a custom
logging setup then the code for <code>setup_default_logging()</code> and the
<code>setup_logging()</code> function are a sensible place to start.</dd>
<dt>mirror_epinow</dt>
<dd>Logical, defaults to FALSE. Should internal logging be
returned from <code>epinow()</code> to the console.</dd>
<dt>target_date</dt>
<dd>Date, defaults to maximum found in the data if not
specified.</dd></dl>

Arguments

<a href='https://lifecycle.r-lib.org/articles/stages.html#questioning'><img src='figures/lifecycle-questioning.svg' alt='[Questioning]' /></a>
Sets up default logging. Usage of logging is currently being explored as the
current setup cannot log stan errors or progress.

Setup Default Logging — setup_default_logging

<dl>

<dt>logs</dt>
<dd>Character path indicating the target folder in which to store log
information. Defaults to the temporary directory if not specified. Default
logging can be disabled if <code>logs</code> is set to NULL. If specifying a custom
logging setup then the code for <code>setup_default_logging()</code> and the
<code>setup_logging()</code> function are a sensible place to start.</dd>


<dt>mirror_epinow</dt>
<dd>Logical, defaults to FALSE. Should internal logging be
returned from <code>epinow()</code> to the console.</dd>


<dt>target_date</dt>
<dd>Date, defaults to maximum found in the data if not
specified.</dd>

</dl>

Setup Default Logging

setup_default_logging: Setup Default Logging

Description

Usage

Value

Arguments

Examples