summarise_results

<a href="https://lifecycle.r-lib.org/articles/stages.html#questioning"><img src="figures/lifecycle-questioning.svg?package=EpiNow2&version=1.6.1" alt="[Questioning]"></a>
Used internally by <code>regional_summary</code> to produce a summary table of results.
May be streamlined in later releases.

internal

Estimates the time-varying reproduction number,
rate of spread, and doubling time using a range of open-source tools
(Abbott et al. (2020) <doi:10.12688/wellcomeopenres.16006.1>), and
current best practices (Gostic et al. (2020)
<doi:10.1101/2020.06.18.20134858>). It aims to help users avoid some
of the limitations of naive implementations in a framework that is
informed by community feedback and is actively supported.

Sebastian Funk

EpiNow2

Estimate Real-Time Case Counts and Time-Varying Epidemiological
Parameters

Sam Abbott

Joel Hellewell

Katharine Sherratt

Katelyn Gostic

Joe Hickson

Hamada S. Badr

Michael DeWitt

James M. Azam

Robin Thompson

Sophie Meakin

James Munday

Nikos Bosse

Paul Mee

Peter Ellis

Pietro Monticone

Lloyd Chapman

Andrew Johnson

Kaitlyn Johnson

EpiForecasts 

summarise_results function

<dl><dt>regions</dt>
<dd>An character string containing the list of regions to extract
results for (must all have results for the same target date).</dd>
<dt>summaries</dt>
<dd>A list of summary <code>&lt;data.frame&gt;</code>s as output by <code>epinow</code></dd>
<dt>results_dir</dt>
<dd>An optional character string indicating the location of
the results directory to extract results from.</dd>
<dt>target_date</dt>
<dd>A character string indicating the target date to extract
results for. All regions must have results
for this date.</dd>
<dt>region_scale</dt>
<dd>A character string indicating the name to give the
regions being summarised.</dd></dl>

Arguments

<a href='https://lifecycle.r-lib.org/articles/stages.html#questioning'><img src='figures/lifecycle-questioning.svg' alt='[Questioning]' /></a>
Used internally by <code>regional_summary</code> to produce a summary table of results.
May be streamlined in later releases.

Summarise Real-time Results — summarise_results

<dl>

<dt>regions</dt>
<dd>An character string containing the list of regions to extract
results for (must all have results for the same target date).</dd>


<dt>summaries</dt>
<dd>A list of summary <code>&lt;data.frame&gt;</code>s as output by <code>epinow</code></dd>


<dt>results_dir</dt>
<dd>An optional character string indicating the location of
the results directory to extract results from.</dd>


<dt>target_date</dt>
<dd>A character string indicating the target date to extract
results for. All regions must have results
for this date.</dd>


<dt>region_scale</dt>
<dd>A character string indicating the name to give the
regions being summarised.</dd>

</dl>

Summarise Real-time Results

summarise_results: Summarise Real-time Results

Description

Usage

Value

Arguments