get_incubation_period

<a href="https://lifecycle.r-lib.org/articles/stages.html#deprecated"><img src="figures/lifecycle-deprecated.svg?package=EpiNow2&version=1.7.0" alt="[Deprecated]"></a>
Extracts a literature distribution from <code>generation_times</code>.
This function has been deprecated. Please specify a distribution
using functions such as <code><a href="/link/Gamma()?package=EpiNow2&version=1.7.0" data-mini-rdoc="EpiNow2::Gamma()">Gamma()</a></code> or <code>LogNormal()</code> instead.

internal

Estimates the time-varying reproduction number,
rate of spread, and doubling time using a range of open-source tools
(Abbott et al. (2020) <doi:10.12688/wellcomeopenres.16006.1>), and
current best practices (Gostic et al. (2020)
<doi:10.1101/2020.06.18.20134858>). It aims to help users avoid some
of the limitations of naive implementations in a framework that is
informed by community feedback and is actively supported.

Sebastian Funk

EpiNow2

Estimate Real-Time Case Counts and Time-Varying Epidemiological
Parameters

Sam Abbott

Joel Hellewell

Katharine Sherratt

Katelyn Gostic

Joe Hickson

Hamada S. Badr

Michael DeWitt

James M. Azam

Robin Thompson

Sophie Meakin

James Munday

Nikos Bosse

Paul Mee

Peter Ellis

Pietro Monticone

Lloyd Chapman

Andrew Johnson

Kaitlyn Johnson

EpiForecasts 

get_incubation_period function

<dl><dt>disease</dt>
<dd>A character string indicating the disease of interest.</dd>
<dt>source</dt>
<dd>A character string indicating the source of interest.</dd>
<dt>max_value</dt>
<dd>Numeric, the maximum value to allow. Defaults to 14 days.</dd>
<dt>fixed</dt>
<dd>Logical, defaults to <code>FALSE</code>. Should distributions be supplied
as fixed values (vs with uncertainty)?</dd></dl>

Arguments

<a href='https://lifecycle.r-lib.org/articles/stages.html#deprecated'><img src='figures/lifecycle-deprecated.svg' alt='[Deprecated]' /></a>
Extracts a literature distribution from <code>generation_times</code>.
This function has been deprecated. Please specify a distribution
using functions such as <code><a href='https://rdrr.io/r/stats/family.html'>Gamma()</a></code> or <code>LogNormal()</code> instead.

Get a Literature Distribution for the Incubation Period — get_incubation_period

<dl>

<dt>disease</dt>
<dd>A character string indicating the disease of interest.</dd>


<dt>source</dt>
<dd>A character string indicating the source of interest.</dd>


<dt>max_value</dt>
<dd>Numeric, the maximum value to allow. Defaults to 14 days.</dd>


<dt>fixed</dt>
<dd>Logical, defaults to <code>FALSE</code>. Should distributions be supplied
as fixed values (vs with uncertainty)?</dd>

</dl>

Get a Literature Distribution for the Incubation Period

get_incubation_period: Get a Literature Distribution for the Incubation Period

Description

Usage

Value

Arguments

See Also