construct_output

<a href="https://lifecycle.r-lib.org/articles/stages.html#stable"><img src="figures/lifecycle-stable.svg?package=EpiNow2&version=1.7.1" alt="[Stable]"></a>
Combines the output produced internally by <code>epinow</code> into a single list.

internal

Estimates the time-varying reproduction number,
rate of spread, and doubling time using a range of open-source tools
(Abbott et al. (2020) <doi:10.12688/wellcomeopenres.16006.1>), and
current best practices (Gostic et al. (2020)
<doi:10.1101/2020.06.18.20134858>). It aims to help users avoid some
of the limitations of naive implementations in a framework that is
informed by community feedback and is actively supported.

Sebastian Funk

EpiNow2

Estimate Real-Time Case Counts and Time-Varying Epidemiological
Parameters

Sam Abbott

Joel Hellewell

Katharine Sherratt

Katelyn Gostic

Joe Hickson

Hamada S. Badr

Michael DeWitt

James M. Azam

Robin Thompson

Sophie Meakin

James Munday

Nikos Bosse

Paul Mee

Peter Ellis

Pietro Monticone

Lloyd Chapman

Andrew Johnson

Kaitlyn Johnson

EpiForecasts 

construct_output function

<dl><dt>estimates</dt>
<dd>List of data frames as output by <code>estimate_infections</code></dd>
<dt>estimated_reported_cases</dt>
<dd>A list of dataframes as produced by
<code>estimates_by_report_date</code>.</dd>
<dt>plots</dt>
<dd>A list of plots as produced by <code>report_plots</code>.</dd>
<dt>summary</dt>
<dd>A list of summary output as produced by <code>report_summary</code>.</dd>
<dt>samples</dt>
<dd>Logical, defaults to TRUE. Should samples be saved</dd></dl>

Arguments

<a href='https://lifecycle.r-lib.org/articles/stages.html#stable'><img src='figures/lifecycle-stable.svg' alt='[Stable]' /></a>
Combines the output produced internally by <code>epinow</code> into a single list.

Construct Output — construct_output

<dl>

<dt>estimates</dt>
<dd>List of data frames as output by <code>estimate_infections</code></dd>


<dt>estimated_reported_cases</dt>
<dd>A list of dataframes as produced by
<code>estimates_by_report_date</code>.</dd>


<dt>plots</dt>
<dd>A list of plots as produced by <code>report_plots</code>.</dd>


<dt>summary</dt>
<dd>A list of summary output as produced by <code>report_summary</code>.</dd>


<dt>samples</dt>
<dd>Logical, defaults to TRUE. Should samples be saved</dd>

</dl>

Construct Output

construct_output: Construct Output

Description

Usage

Value

Arguments