create_future_rt

<a href="https://lifecycle.r-lib.org/articles/stages.html#stable"><img src="figures/lifecycle-stable.svg?package=EpiNow2&version=1.7.1" alt="[Stable]"></a>
Converts the <code>future</code> argument from <code>rt_opts()</code> into arguments that can be
passed to stan.

internal

Estimates the time-varying reproduction number,
rate of spread, and doubling time using a range of open-source tools
(Abbott et al. (2020) <doi:10.12688/wellcomeopenres.16006.1>), and
current best practices (Gostic et al. (2020)
<doi:10.1101/2020.06.18.20134858>). It aims to help users avoid some
of the limitations of naive implementations in a framework that is
informed by community feedback and is actively supported.

Sebastian Funk

EpiNow2

Estimate Real-Time Case Counts and Time-Varying Epidemiological
Parameters

Sam Abbott

Joel Hellewell

Katharine Sherratt

Katelyn Gostic

Joe Hickson

Hamada S. Badr

Michael DeWitt

James M. Azam

Robin Thompson

Sophie Meakin

James Munday

Nikos Bosse

Paul Mee

Peter Ellis

Pietro Monticone

Lloyd Chapman

Andrew Johnson

Kaitlyn Johnson

EpiForecasts 

create_future_rt function

<dl><dt>future</dt>
<dd>A character string or integer. This argument indicates how to
set future Rt values. Supported options are to project using the Rt model
("project"), to use the latest estimate based on partial data ("latest"),
to use the latest estimate based on data that is over 50% complete
("estimate"). If an integer is supplied then the Rt estimate from this many
days into the future (or past if negative) past will be used forwards in
time.</dd>
<dt>delay</dt>
<dd>Numeric mean delay</dd></dl>

Arguments

<a href='https://lifecycle.r-lib.org/articles/stages.html#stable'><img src='figures/lifecycle-stable.svg' alt='[Stable]' /></a>
Converts the <code>future</code> argument from <code>rt_opts()</code> into arguments that can be
passed to stan.

Construct the Required Future Rt assumption — create_future_rt

<dl>

<dt>future</dt>
<dd>A character string or integer. This argument indicates how to
set future Rt values. Supported options are to project using the Rt model
("project"), to use the latest estimate based on partial data ("latest"),
to use the latest estimate based on data that is over 50% complete
("estimate"). If an integer is supplied then the Rt estimate from this many
days into the future (or past if negative) past will be used forwards in
time.</dd>


<dt>delay</dt>
<dd>Numeric mean delay</dd>

</dl>

Construct the Required Future Rt assumption

create_future_rt: Construct the Required Future Rt assumption

Description

Usage

Value

Arguments