extract_parameter

<a href="https://lifecycle.r-lib.org/articles/stages.html#stable"><img src="figures/lifecycle-stable.svg?package=EpiNow2&version=1.7.1" alt="[Stable]"></a>
Extracts a single from a list of stan output and returns it as a
<code>&lt;data.table&gt;</code>.

internal

Estimates the time-varying reproduction number,
rate of spread, and doubling time using a range of open-source tools
(Abbott et al. (2020) <doi:10.12688/wellcomeopenres.16006.1>), and
current best practices (Gostic et al. (2020)
<doi:10.1101/2020.06.18.20134858>). It aims to help users avoid some
of the limitations of naive implementations in a framework that is
informed by community feedback and is actively supported.

Sebastian Funk

EpiNow2

Estimate Real-Time Case Counts and Time-Varying Epidemiological
Parameters

Sam Abbott

Joel Hellewell

Katharine Sherratt

Katelyn Gostic

Joe Hickson

Hamada S. Badr

Michael DeWitt

James M. Azam

Robin Thompson

Sophie Meakin

James Munday

Nikos Bosse

Paul Mee

Peter Ellis

Pietro Monticone

Lloyd Chapman

Andrew Johnson

Kaitlyn Johnson

EpiForecasts 

extract_parameter function

<dl><dt>param</dt>
<dd>Character string indicating the parameter to extract</dd>
<dt>samples</dt>
<dd>Extracted stan model (using <code>rstan::extract()</code>)</dd>
<dt>dates</dt>
<dd>A vector identifying the dimensionality of the parameter to
extract. Generally this will be a date.</dd></dl>

Arguments

<a href='https://lifecycle.r-lib.org/articles/stages.html#stable'><img src='figures/lifecycle-stable.svg' alt='[Stable]' /></a>
Extracts a single from a list of stan output and returns it as a
<code>&lt;data.table&gt;</code>.

Extract Samples for a Parameter from a Stan model — extract_parameter

<dl>

<dt>param</dt>
<dd>Character string indicating the parameter to extract</dd>


<dt>samples</dt>
<dd>Extracted stan model (using <code>rstan::extract()</code>)</dd>


<dt>dates</dt>
<dd>A vector identifying the dimensionality of the parameter to
extract. Generally this will be a date.</dd>

</dl>

Extract Samples for a Parameter from a Stan model

extract_parameter: Extract Samples for a Parameter from a Stan model

Description

Usage

Value

Arguments