forecast_opts

<a href="https://lifecycle.r-lib.org/articles/stages.html#stable"><img src="figures/lifecycle-stable.svg?package=EpiNow2&version=1.7.1" alt="[Stable]"></a>
Defines a list specifying the arguments passed to underlying stan
backend functions via <code>stan_sampling_opts()</code> and <code>stan_vb_opts()</code>. Custom
settings can be supplied which override the defaults.

Estimates the time-varying reproduction number,
rate of spread, and doubling time using a range of open-source tools
(Abbott et al. (2020) <doi:10.12688/wellcomeopenres.16006.1>), and
current best practices (Gostic et al. (2020)
<doi:10.1101/2020.06.18.20134858>). It aims to help users avoid some
of the limitations of naive implementations in a framework that is
informed by community feedback and is actively supported.

Sebastian Funk

EpiNow2

Estimate Real-Time Case Counts and Time-Varying Epidemiological
Parameters

Sam Abbott

Joel Hellewell

Katharine Sherratt

Katelyn Gostic

Joe Hickson

Hamada S. Badr

Michael DeWitt

James M. Azam

Robin Thompson

Sophie Meakin

James Munday

Nikos Bosse

Paul Mee

Peter Ellis

Pietro Monticone

Lloyd Chapman

Andrew Johnson

Kaitlyn Johnson

EpiForecasts 

forecast_opts function

<dl><dt>horizon</dt>
<dd>Numeric, defaults to 7. Number of days into the future to
forecast.</dd>
<dt>accumulate</dt>
<dd>Integer, the number of days to accumulate in forecasts, if
any. If not given and observations are accumulated at constant frequency in
the data used for fitting then the same accumulation will be used in
forecasts unless set explicitly here.</dd></dl>

Arguments

<a href='https://lifecycle.r-lib.org/articles/stages.html#stable'><img src='figures/lifecycle-stable.svg' alt='[Stable]' /></a>
Defines a list specifying the arguments passed to underlying stan
backend functions via <code>stan_sampling_opts()</code> and <code>stan_vb_opts()</code>. Custom
settings can be supplied which override the defaults.

Forecast options — forecast_opts

<dl>

<dt>horizon</dt>
<dd>Numeric, defaults to 7. Number of days into the future to
forecast.</dd>


<dt>accumulate</dt>
<dd>Integer, the number of days to accumulate in forecasts, if
any. If not given and observations are accumulated at constant frequency in
the data used for fitting then the same accumulation will be used in
forecasts unless set explicitly here.</dd>

</dl>

Forecast options

forecast_opts: Forecast options

Description

Usage

Value

Arguments

See Also

Examples