save_estimate_infections

<a href="https://lifecycle.r-lib.org/articles/stages.html#stable"><img src="figures/lifecycle-stable.svg?package=EpiNow2&version=1.7.1" alt="[Stable]"></a>
Saves output from <code>estimate_infections</code> to a target directory.

internal

Estimates the time-varying reproduction number,
rate of spread, and doubling time using a range of open-source tools
(Abbott et al. (2020) <doi:10.12688/wellcomeopenres.16006.1>), and
current best practices (Gostic et al. (2020)
<doi:10.1101/2020.06.18.20134858>). It aims to help users avoid some
of the limitations of naive implementations in a framework that is
informed by community feedback and is actively supported.

Sebastian Funk

EpiNow2

Estimate Real-Time Case Counts and Time-Varying Epidemiological
Parameters

Sam Abbott

Joel Hellewell

Katharine Sherratt

Katelyn Gostic

Joe Hickson

Hamada S. Badr

Michael DeWitt

James M. Azam

Robin Thompson

Sophie Meakin

James Munday

Nikos Bosse

Paul Mee

Peter Ellis

Pietro Monticone

Lloyd Chapman

Andrew Johnson

Kaitlyn Johnson

EpiForecasts 

save_estimate_infections function

<dl><dt>estimates</dt>
<dd>List of data frames as output by <code>estimate_infections</code></dd>
<dt>target_folder</dt>
<dd>Character string specifying where to save results (will
create if not present).</dd>
<dt>samples</dt>
<dd>Logical, defaults to TRUE. Should samples be saved</dd>
<dt>return_fit</dt>
<dd>Logical, defaults to TRUE. Should the fit stan object
be returned.</dd></dl>

Arguments

<a href='https://lifecycle.r-lib.org/articles/stages.html#stable'><img src='figures/lifecycle-stable.svg' alt='[Stable]' /></a>
Saves output from <code>estimate_infections</code> to a target directory.

Save Estimated Infections — save_estimate_infections

<dl>

<dt>estimates</dt>
<dd>List of data frames as output by <code>estimate_infections</code></dd>


<dt>target_folder</dt>
<dd>Character string specifying where to save results (will
create if not present).</dd>


<dt>samples</dt>
<dd>Logical, defaults to TRUE. Should samples be saved</dd>


<dt>return_fit</dt>
<dd>Logical, defaults to TRUE. Should the fit stan object
be returned.</dd>

</dl>

Save Estimated Infections

save_estimate_infections: Save Estimated Infections

Description

Usage

Value

Arguments

See Also