Function returning the disease-specific PNG map previously created
and stored in a specific folder (see pathPNG argument) and
that will be included in the epidemiological report at the bookmark location
of the template report, depending of the type of map.
Three type of maps can be included in the report:
Bookmark 'MAP_NB': Distribution of cases by country.
An additional caption will be included at the location of the bookmark 'MAP_NB_CAPTION'.
Bookmark 'MAP_RATE': Distribution of cases
per 100 000 population by country. An additional caption will be included
at the location of the bookmark 'MAP_RATE_CAPTION'.
Bookmark 'MAP_ASR': Distribution of cases using
age-strandardised rates per 100 000 population by country.
An additional caption will be included at the location of the bookmark 'MAP_ASR_CAPTION'.
(see ECDC reports https://www.ecdc.europa.eu/en/all-topics-z/surveillance-and-disease-data/annual-epidemiological-reports-aers)
getMap(
disease = "DENGUE",
year = 2019,
reportParameters = EpiReport::AERparams,
index = 1,
pathPNG = system.file("maps", package = "EpiReport"),
doc
)'Word' doc an image preview
character string, disease code (default "DENGUE").
numeric, year to produce the map for (default 2019).
dataframe, dataset including the required parameters
for the map and report production (default AERparams) (see specification
of the dataset in the package vignette with browseVignettes(package = "EpiReport"))
integer, figure number
character string, full path to the folder containing the maps in PNG
(default 'maps' folder included in the package system.file("maps", package = "EpiReport"))
'Word' document (see 'officer' package) in which to add the maps
at the bookmark location.
If doc is missing, getMap returns a preview of the PNG image.
Global function for the full epidemilogical report: getAER
Required Packages: officer
Internal functions: includeMap previewMap
Default datasets: AERparams
# --- Preview of the PNG map using the default Dengue dataset
getMap()
# --- Plot using external PNG image
# --- Please see examples in the vignette
browseVignettes(package = "EpiReport")
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