shapeECDCFlexTable

flextable (see <code>'flextable'</code> package), table to shape into ECDC table layout

dataframe including the multiple headers to add to the flextable object.
Please note that the column <code>col_keys</code> should contain the names of the flextable object
(i.e. <code>col_key = names(x)</code>), accordingly to <code><a rd-options="" href="/link/set_header_df?package=EpiReport&version=1.0.2" data-mini-rdoc="EpiReport::set_header_df">set_header_df</a></code>.

headers

fsize

character, font name (Default <code>"Tahoma"</code>)

fname

character string, hexadecimal code for the header background
color (Default <code>EcdcColors(col_scale = "green", n=1)</code>)

maincolor

bolean, last row in bold (Default <code>TRUE</code>),
usually used when the last row includes totals (EU/EEA totals)

lastbold

Shaping the final table including titles, adding background color, specifying font name and size.

Drafting an epidemiological report in 'Microsoft Word' format for a given disease,
similar to the Annual Epidemiological Reports published by the European Centre
for Disease Prevention and Control. Through standalone functions, it is specifically
designed to generate each disease specific output presented in these reports and includes:
- Table with the distribution of cases by Member State over the last five years;
- Seasonality plot with the distribution of cases at the European Union / European Economic Area level,
by month, over the past five years;
- Trend plot with the trend and number of cases at the European Union / European Economic Area level,
by month, over the past five years;
- Age and gender bar graph with the distribution of cases at the European Union / European Economic Area level.
Two types of datasets can be used:
- The default dataset of dengue 2015-2019 data;
- Any dataset specified as described in the vignette.

Lore Merdrignac

EpiReport

Epidemiological Report

Tommi Karki

Esther Kissling

Joana Gomes Dias

shapeECDCFlexTable function

<dl><dt>ft</dt>
<dd>flextable (see <code>'flextable'</code> package), table to shape into ECDC table layout</dd>
<dt>headers</dt>
<dd>dataframe including the multiple headers to add to the flextable object.
Please note that the column <code>col_keys</code> should contain the names of the flextable object
(i.e. <code>col_key = names(x)</code>), accordingly to <code>set_header_df</code>.</dd>
<dt>fsize</dt>
<dd>numeric, font to use (Default 7)</dd>
<dt>fname</dt>
<dd>character, font name (Default <code>"Tahoma"</code>)</dd>
<dt>maincolor</dt>
<dd>character string, hexadecimal code for the header background
color (Default <code>EcdcColors(col_scale = "green", n=1)</code>)</dd>
<dt>lastbold</dt>
<dd>bolean, last row in bold (Default <code>TRUE</code>),
usually used when the last row includes totals (EU/EEA totals)</dd></dl>

Arguments

Shaping the final table (layout, title, color, font) — shapeECDCFlexTable

<dl>

<dt>ft</dt>
<dd>flextable (see <code>'flextable'</code> package), table to shape into ECDC table layout</dd>


<dt>headers</dt>
<dd>dataframe including the multiple headers to add to the flextable object.
Please note that the column <code>col_keys</code> should contain the names of the flextable object
(i.e. <code>col_key = names(x)</code>), accordingly to <code>set_header_df</code>.</dd>


<dt>fsize</dt>
<dd>numeric, font to use (Default 7)</dd>


<dt>fname</dt>
<dd>character, font name (Default <code>"Tahoma"</code>)</dd>


<dt>maincolor</dt>
<dd>character string, hexadecimal code for the header background
color (Default <code>EcdcColors(col_scale = "green", n=1)</code>)</dd>


<dt>lastbold</dt>
<dd>bolean, last row in bold (Default <code>TRUE</code>),
usually used when the last row includes totals (EU/EEA totals)</dd>

</dl>

shapeECDCFlexTable: Shaping the final table (layout, title, color, font)

Description

Usage

Value

Arguments

See Also