cleanECDCTable

Cleaning the final table: identifying missing reports with <code>'-'</code>,
replacing the Member State codes with Member State names (see correspondence
table <code>MSCode</code>), identifying not reporting Member States with <code>'.'</code>

Drafting an epidemiological report in 'Microsoft Word' format for a given disease,
similar to the Annual Epidemiological Reports published by the European Centre
for Disease Prevention and Control. Through standalone functions, it is specifically
designed to generate each disease specific output presented in these reports and includes:
- Table with the distribution of cases by Member State over the last five years;
- Seasonality plot with the distribution of cases at the European Union / European Economic Area level,
by month, over the past five years;
- Trend plot with the trend and number of cases at the European Union / European Economic Area level,
by month, over the past five years;
- Age and gender bar graph with the distribution of cases at the European Union / European Economic Area level.
Two types of datasets can be used:
- The default dataset of dengue 2015-2019 data;
- Any dataset specified as described in the vignette.

Lore Merdrignac

EpiReport

Epidemiological Report

Tommi Karki

Esther Kissling

Joana Gomes Dias

cleanECDCTable function

<dl><dt>x</dt>
<dd>dataframe, dataset to clean</dd>
<dt>Country</dt>
<dd>character vector, full names of the countries /
Member States (e.g. Austria, Belgium, etc.) that will replace the GeoCodes
included the x dataframe (Default <code>MSCode$Country</code>)</dd>
<dt>GeoCode</dt>
<dd>character vector, corresponding GeoCode of each Member State
(e.g. AT, BE, etc.) to replace with the country full names (Default <code>MSCode$GeoCode</code>)</dd></dl>

Arguments

Cleaning the final table — cleanECDCTable

<dl>

<dt>x</dt>
<dd>dataframe, dataset to clean</dd>


<dt>Country</dt>
<dd>character vector, full names of the countries /
Member States (e.g. Austria, Belgium, etc.) that will replace the GeoCodes
included the x dataframe (Default <code>MSCode$Country</code>)</dd>


<dt>GeoCode</dt>
<dd>character vector, corresponding GeoCode of each Member State
(e.g. AT, BE, etc.) to replace with the country full names (Default <code>MSCode$GeoCode</code>)</dd>

</dl>

cleanECDCTable: Cleaning the final table

Description

Usage

Value

Arguments

See Also