previewMap

Function previewing the disease-specific PNG map

Drafting an epidemiological report in 'Microsoft Word' format for a given disease,
similar to the Annual Epidemiological Reports published by the European Centre
for Disease Prevention and Control. Through standalone functions, it is specifically
designed to generate each disease specific output presented in these reports and includes:
- Table with the distribution of cases by Member State over the last five years;
- Seasonality plot with the distribution of cases at the European Union / European Economic Area level,
by month, over the past five years;
- Trend plot with the trend and number of cases at the European Union / European Economic Area level,
by month, over the past five years;
- Age and gender bar graph with the distribution of cases at the European Union / European Economic Area level.
Two types of datasets can be used:
- The default dataset of dengue 2015-2019 data;
- Any dataset specified as described in the vignette.

Lore Merdrignac

EpiReport

Epidemiological Report

Tommi Karki

Esther Kissling

Joana Gomes Dias

previewMap function

<dl><dt>disease</dt>
<dd>character string, disease code (default <code>"DENGUE"</code>).</dd>
<dt>year</dt>
<dd>numeric, year to produce the graph for (default <code>2019</code>).</dd>
<dt>reportParameters</dt>
<dd>dataframe, dataset including the required parameters
for the graph and report production (default <code>AERparams</code>) (see specification
of the dataset in the package vignette with <code>browseVignettes(package = "EpiReport")</code>)</dd>
<dt>pathPNG</dt>
<dd>character string, full path to the folder containing the maps in PNG
(default 'maps' folder included in the package <code>system.file("maps", package = "EpiReport")</code>)</dd>
<dt>namePNGsuffix</dt>
<dd>character string, suffix of the PNG file name of the map
(i.e. <code>"COUNT"</code>, <code>"RATE"</code> or <code>"AGESTANDARDISED"</code>.)</dd></dl>

Arguments

Previewing the PNG map — previewMap

<dl>

<dt>disease</dt>
<dd>character string, disease code (default <code>"DENGUE"</code>).</dd>


<dt>year</dt>
<dd>numeric, year to produce the graph for (default <code>2019</code>).</dd>


<dt>reportParameters</dt>
<dd>dataframe, dataset including the required parameters
for the graph and report production (default <code>AERparams</code>) (see specification
of the dataset in the package vignette with <code>browseVignettes(package = "EpiReport")</code>)</dd>


<dt>pathPNG</dt>
<dd>character string, full path to the folder containing the maps in PNG
(default 'maps' folder included in the package <code>system.file("maps", package = "EpiReport")</code>)</dd>


<dt>namePNGsuffix</dt>
<dd>character string, suffix of the PNG file name of the map
(i.e. <code>"COUNT"</code>, <code>"RATE"</code> or <code>"AGESTANDARDISED"</code>.)</dd>

</dl>

previewMap: Previewing the PNG map

Description

Usage

Value

Arguments

See Also