importAtlasExport

Import ECDC Atlas csv export file 
(exported from the online ECDC Atlas:
<a href="https://atlas.ecdc.europa.eu/public/index.aspx">https://atlas.ecdc.europa.eu/public/index.aspx</a>) 
e.g. "ECDC_surveillance_data_Anthrax.csv"

Exploring time series for signal detection. It is specifically designed
to detect possible outbreaks using infectious disease surveillance data
at the European Union / European Economic Area or country level.
Automatic detection tools used are presented in the paper
"Monitoring count time series in R: aberration detection in public health surveillance",
by Salmon (2016) <doi:10.18637/jss.v070.i10>.
The package includes:
- Signal Detection tool, an interactive 'shiny' application
in which the user can import external data and perform basic signal detection analyses;
- An automated report in HTML format, presenting the results of the time series analysis in tables and graphs.
This report can also be stratified by population characteristics (see 'Population' variable).
This project was funded by the European Centre for Disease Prevention and Control.

Lore Merdrignac

EpiSignalDetection

Signal Detection Analysis

Joana Gomes Dias

Esther Kissling

Tommi Karki

Margot Einoder-Moreno

importAtlasExport function

<dl><dt>x</dt>
<dd>file name of a csv file, export from the ECDC Atlas
(e.g. <code>x = 'ECDC_surveillance_data_Anthrax.csv'</code>)</dd></dl>

Arguments

Import ECDC Atlas csv export file 
(exported from the online ECDC Atlas:
<a href='https://atlas.ecdc.europa.eu/public/index.aspx'>https://atlas.ecdc.europa.eu/public/index.aspx</a>) 
e.g. "ECDC_surveillance_data_Anthrax.csv"

Import ECDC Atlas export file (csv) — importAtlasExport

<dl>

<dt>x</dt>
<dd>file name of a csv file, export from the ECDC Atlas
(e.g. <code>x = 'ECDC_surveillance_data_Anthrax.csv'</code>)</dd>

</dl>

importAtlasExport: Import ECDC Atlas export file (csv)

Description

Usage

Value

Arguments

Details

See Also

Examples