calc_3d

vector containing B allen frequency (BAF)

vector of factors containing genotype

seg_raw

Return mixture estimation of a normal and 3 tumors
Takes BAF, LRR, chr, x, gt, seg_raw

internal

Includes R functions for the estimation of tumor clones percentages for both snp data and (whole) genome sequencing data. See Cheng, Y., Dai, J. Y., Paulson, T. G., Wang, X., Li, X., Reid, B. J., & Kooperberg, C. (2017). Quantification of multiple tumor clones using gene array and sequencing data. The Annals of Applied Statistics, 11(2), 967-991, <doi:10.1214/17-AOAS1026> for more details.

calc_3d: Return mixture estimation of a normal and 3 tumors Takes BAF, LRR, chr, x, gt, seg_raw

Description

Usage

Arguments

Value