example_data

internal

Includes R functions for the estimation of tumor clones percentages for both snp data and (whole) genome sequencing data. See Cheng, Y., Dai, J. Y., Paulson, T. G., Wang, X., Li, X., Reid, B. J., & Kooperberg, C. (2017). Quantification of multiple tumor clones using gene array and sequencing data. The Annals of Applied Statistics, 11(2), 967-991, <doi:10.1214/17-AOAS1026> for more details.

Xuan You

EstMix

Tumor Clones Percentage Estimations

example_data function

<p>A data frame with 5 variables: <code>BAF</code>, <code>chr</code>, <code>GT</code>, <code>LRR</code> and <code>x</code>, with chromosome number = 22</p>

example_data: ExampleData

Description

Usage

Arguments

Format