ExomeDepth (version 0.9.2)

TestCNV: Computes the Bayes Factor in favour of a CNV defined by position and type.

Description

Test what evidence supports the presence of a CNV in an ExomeDepth object.

Usage

TestCNV(x, chromosome, start, end, type)

Arguments

x

ExomeDepth object containing the likelihood information.

chromosome

Chromosome data (factor)

start

Start of the putative CNV

end

End of the putative CNV

type

character, Should be either 'deletion' or 'duplication'

Value

• A Bayes factor assessing the evidence in favoor of the CNV.