ExomeCount

An example dataset of 4 exome samples, chromosome 1 only.

datasets

Calls copy number variants (CNVs) from targeted sequence data, typically exome sequencing experiments designed to identify the genetic basis of Mendelian disorders.

Vincent Plagnol

ExomeDepth

Calls Copy Number Variants from Targeted Sequence Data

ExomeCount function

A data frame with 25592 observations on the following 9 variables.<dl class="dl-horizontal">
 <dt><code>chromosome</code></dt><dd>a character vector with chromosome names (only chromosome 1 in that case)</dd>
 <dt><code>start</code></dt><dd>Start of the exons</dd>
 <dt><code>end</code></dt><dd>End of the exons</dd>
 <dt><code>exons</code></dt><dd>a character vector with the exon names.</dd>
 <dt><code>camfid.032KA_sorted_unique.bam</code></dt><dd>a numeric vector of read count data.</dd>
 <dt><code>camfid.033ahw_sorted_unique.bam</code></dt><dd>a numeric vector of read count data.</dd>
 <dt><code>camfid.035if_sorted_unique.bam</code></dt><dd>a numeric vector of read count data.</dd>
 <dt><code>camfid.034pc_sorted_unique.bam</code></dt><dd>a numeric vector of read count data.</dd>
 <dt><code>GC</code></dt><dd>a numeric vector with the GC content.</dd>
 </dl>

Format

Example dataset for ExomeDepth — ExomeCount

A data frame with 25592 observations on the following 9 variables.<dl class='dl-horizontal'>
 <dt><code>chromosome</code></dt><dd>a character vector with chromosome names (only chromosome 1 in that case)</dd>
 <dt><code>start</code></dt><dd>Start of the exons</dd>
 <dt><code>end</code></dt><dd>End of the exons</dd>
 <dt><code>exons</code></dt><dd>a character vector with the exon names.</dd>
 <dt><code>camfid.032KA_sorted_unique.bam</code></dt><dd>a numeric vector of read count data.</dd>
 <dt><code>camfid.033ahw_sorted_unique.bam</code></dt><dd>a numeric vector of read count data.</dd>
 <dt><code>camfid.035if_sorted_unique.bam</code></dt><dd>a numeric vector of read count data.</dd>
 <dt><code>camfid.034pc_sorted_unique.bam</code></dt><dd>a numeric vector of read count data.</dd>
 <dt><code>GC</code></dt><dd>a numeric vector with the GC content.</dd>
 </dl>

ExomeCount: Example dataset for ExomeDepth

Description

Usage

Arguments

Format

References