basepreplot

Plot the base frequency distribution diagram for small RNA (sRNA)

Three functional modules, including genetic features, differential expression analysis and non-additive expression analysis were integrated into the package. And the package is suitable for RNA-seq and small RNA sequencing data. Besides, two methods of non-additive expression analysis were provided. One is the calculation of the additive (a) and dominant (d), the other is the evaluation of expression level dominance by comparing the total expression of the gene in hybrid offspring with the expression level in parents. For non-additive expression analysis of RNA-seq data, it is only applicable to hybrid offspring (including two sub-genomes) species for the time being.

Yu qing Wu

ExpGenetic

Non-Additive Expression Analysis of Hybrid Offspring

Yuqing Wu

basepreplot function

<dl><dt>sRNAdata</dt>
<dd>A data frame. Base frequency distribution of sRNAs.</dd>
<dt>width</dt>
<dd>A numeric. Bar width, and default is 0.6.</dd>
<dt>font_size</dt>
<dd>A numeric. Size of axis ticks and legend item labels, and default is 10.</dd>
<dt>title_size</dt>
<dd>A numeric. Size of axis titles and legend titles, and default is 12.</dd></dl>

Arguments

Plot the base frequency distribution diagram for small RNA (sRNA) — basepreplot

<dl>

<dt>sRNAdata</dt>
<dd>A data frame. Base frequency distribution of sRNAs.</dd>


<dt>width</dt>
<dd>A numeric. Bar width, and default is 0.6.</dd>


<dt>font_size</dt>
<dd>A numeric. Size of axis ticks and legend item labels, and default is 10.</dd>


<dt>title_size</dt>
<dd>A numeric. Size of axis titles and legend titles, and default is 12.</dd>

</dl>

basepreplot: Plot the base frequency distribution diagram for small RNA (sRNA)

Description

Usage

Value

Arguments

Examples