ExpGenetic (version 0.1.0)

lenplot: Plot the length distribution diagram for small RNAs (sRNAs)

Description

There are two types of pictures: bar plot (type = "bar") and line plot (type = "line"). For the bar plot, the Y-axis displays the proportion of sRNAs in a certain length, the X-axis represents sRNAs in different length. And for line plot, the Y-axis displays the abundance of sRNAs in a certain length, the X-axis represents sRNAs in different length.

Usage

lenplot(sRNAdata, type, width = 0.6, font_size = 10, title_size = 12)

Value

Length distribution plot of sRNAs.

Arguments

sRNAdata

A data frame. Frequency distribution of sRNAs in different length.

type

A character. "bar" or "line".

width

A numeric. Bar width, and default is 0.6. if the type is "line", the parameter does not need to be given.

font_size

A numeric. Size of axis ticks and legend item labels, and default is 10.

title_size

A numeric. Size of axis titles and legend titles, and default is 12.

Examples

#P1(B.napus)
B.napu_sRNA <- srnapredata(sRNAseq = P1_sRNA_seq,Group = "B.napus(AACC)")
#P2(B.rapa)
B.rapa_sRNA <- srnapredata(sRNAseq = P2_sRNA_seq,Group = "B.rapa(AA)")
#F1(B.napus X B.rapa)
B.nr_sRNA <- srnapredata(sRNAseq = F1_sRNA_seq,Group = "B.napus x B.rapa(AAAACC)")
#intergrate these data for length distribution plot
sRNA_data <- rbind(B.napu_sRNA,B.rapa_sRNA,B.nr_sRNA)
#plot
lenplot(sRNAdata = sRNA_data,type = "line")
lenplot(sRNAdata = sRNA_data,type = "bar")